Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3304 ATGTCATCCAAGAACTCTTTGGATGTGCAATTGTCAAAGACGTCCTTTTTGGGTTTGAAAAGATGGGTTTTGATTGGGATAGGTTTTGGTGCATTTATAGTGGTGTTTCTTTGTATATTGTATATTTGGGTGCTGTTTCGGAGGAAGTCTAGGGGTAGGAGATCTCTGGACAAGTCCCAAATACCGAATGTGTCAAAAGATATCAATGTTGACAAAGTTGCGGTGCAGAATTCTCATGTTCAACATGGAAATATGTTTGTTCCTGATGATAATAATTCAGACAAGATATCGGTTCATATGAGGACGAGCAAATTCAGTGATCCTGATAGTGCAAGTCATTGCAGCTCAGTTTATCATCACGAGAGAGGATTAAGTGCGCTTTCATGGGAAGAAGGGAGCTCTGGGAATTATAAGAAGCAGTCTACATTGTCATATGGAGGAGGGCCAATGGCTTCTCCCTCTCCTTTGATTGGTTTGCCGGAATTTTCTCATCTTGGTTGGGGCCACTGGTTTACACTTAGAGATCTTGAACAAGCAACTAATTGTTTCTCGGCTCAGAACGTTCTCGGTGAGGGTGGATATGGAGTTGTTTACAAAGGAAGACTGATCAACGGAACCGAGGTTGCAGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAGAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTTGTGCGCCTGCTTGGATATTGCGTAGAAGGAGTTCACAGGCTGCTGGTGTACGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGACAAGTACCGACTTGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATACTCGGCACAGCCAAAGCACTTGCTTACTTACATGAAGCGATTGAGCCAAAAGTTATTCACCGGGATATAAAGTCTAGCAACATATTGATCGATAATGAGTTCAATGCAAAGGTTTCTGATTTCGGTTTGGCCAAACTTTTGGAATCAGGAGAAAGTTACATAACTACTAGAGTAATGGGAACGTTTGGTTACGTAGCACCAGAATATGCCAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTCGGTGTCCTCCTGCTGGAAGCGGTTACCGGCAGGGACCCTGTAGACTATGCGCGCCCTTCTAATGAGGTTAATCTTGTTGAATGGATTAAGACGATGGTAGGGGCAAGGAGAGCTGAGGAAGTTGTGGACTCGAGCATTGAAGTTAAACCGTCTGCACGTGCTTTAAAGCGTTCCCTTCTGGTTGCACTTAGGTGTATTGATCCTGACGCGGACAAGAGACCTAAAATGAGTCAAGTTGTTAGAATGCTTGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAAGAGCACGACTACTAGCTTCGAAATTGAAGCGGTCAAGGAAATTTCTGATCAAGCTGATACTGAAAAGGTGGTGCATGTGCCCGAAACAACTCAAGGAAAGGATTGA 1512 0.4345 MSSKNSLDVQLSKTSFLGLKRWVLIGIGFGAFIVVFLCILYIWVLFRRKSRGRRSLDKSQIPNVSKDINVDKVAVQNSHVQHGNMFVPDDNNSDKISVHMRTSKFSDPDSASHCSSVYHHERGLSALSWEEGSSGNYKKQSTLSYGGGPMASPSPLIGLPEFSHLGWGHWFTLRDLEQATNCFSAQNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYRLGTLTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDNEFNAKVSDFGLAKLLESGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPSNEVNLVEWIKTMVGARRAEEVVDSSIEVKPSARALKRSLLVALRCIDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSTTTSFEIEAVKEISDQADTEKVVHVPETTQGKD* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3304 503 PANTHER RECEPTOR-LIKE KINASE PLANT 2 495 - -
Tpr4g3304 503 CDD STKc_IRAK 189 455 - -
Tpr4g3304 503 PANTHER OS01G0323000 PROTEIN 2 495 - -
Tpr4g3304 503 Pfam Protein kinase domain 185 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3304 503 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Tpr4g3304 503 ProSiteProfiles Protein kinase domain profile. 183 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3304 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Tpr4g3304 503 Gene3D Transferase(Phosphotransferase) domain 1 259 473 - -
Tpr4g3304 503 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3304 503 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Tpr4g3304 503 Coils Coil 203 223 - -
Tpr4g3304 503 SUPERFAMILY Protein kinase-like (PK-like) 167 459 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3304 Tpr-Chr4 38999398 39004494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3304 170 458 Trihelix Transcription Factor Family AT5G38560 50.508 3.65e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Tpr4g3304 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3304 - - gmx:100778444 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3304 4 38999398 39004494 Tpr4g3304 4 38999398 39004494 ECH
Tpr3g4254 3 47380108 47384690 Tpr4g3304 4 38999398 39004494 PCT