Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3295 ATGCACAATGCAGGAGGCTCTCCTTACCCTTTCTCCAGCAATGGAGAAACACATTCACCAAGTAGACCATTATTGATCAAGGAACAATCATTCCATGATCTTGCACCTTCTCCATCACTGCCTCAATCTACTTCTCCTTGTATCATCAATGAAGCGAAAAACCCTTCTTTTATTAACCTCATAGCCAACTTGAGCATCACAAATGCAAAGATTACTCATCGTTCCTGCTCTGCTCCGTCGGTATTATTCACCGACATGAGAGTAGATTTTCATGAGCCATCTGATCATAGACCTGCATATAGGCCCTCAACTTTAATAGTTAGACTATCTTTCATTATGCTTTTCTTTTATGTGGCTATTGGTGTTACAGTTTACATGTTAAGTGAGAGTTTCAAGGGCACTACCACATTCAGACCTGTAGATGCTGTGTACTTCACAGTGGTAACTTTATGCACTATTGGATATGGAGATATTGTTCCTGATACCATAATTGCAAAAATGTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTATGCTTAATCAATTAGTTGTATACATCTGTGATAGACATGAGGCATTCTTATTGAGCATGATGGATGAGGATAGATACAAGAAAATTCTGAGGACTTGTATGGTTGATGAAGAGAAAGGAAGAATGAGGATAAGAACCAAAGTTTGTGTTGCTTTGGTTGTTGTTATTGTCTGCATTGCTATTGGAACAGTCACTTCACACTTTGTCGAGGATCTGAATTGGGCCGACAGTTTTTATCTCTCCGTTACTTCTGTTACAACGGTTGGTTATGGAGATTATGCTTTCAAAACTTTAGCTGGAAGATGTTTTGCGATTCCGTGGCTTTTGGTAAGCACGTTCGCAGTTACAAGGTCGTTTCTATACCTCACTGATTACAGCTTGCATAAGAGAAGCCGCGAGATGACAAAATGGATTCTTCATAAGAAAATAACCTTATCAGATTTAGCAGCTGCAGATCTTGATCATGATGGATCAATCAGTAAATCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTAGTGAGATAGACATTCTACAAATTAGCAAACAATTTGATTCATTGGACCATGCCATGTATGGCAAGATCACTCTAGCTGACCTCATGGAAACTGTCTAA 1170 0.3863 MHNAGGSPYPFSSNGETHSPSRPLLIKEQSFHDLAPSPSLPQSTSPCIINEAKNPSFINLIANLSITNAKITHRSCSAPSVLFTDMRVDFHEPSDHRPAYRPSTLIVRLSFIMLFFYVAIGVTVYMLSESFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDTIIAKMFTCGFILVGFGFIGFMLNQLVVYICDRHEAFLLSMMDEDRYKKILRTCMVDEEKGRMRIRTKVCVALVVVIVCIAIGTVTSHFVEDLNWADSFYLSVTSVTTVGYGDYAFKTLAGRCFAIPWLLVSTFAVTRSFLYLTDYSLHKRSREMTKWILHKKITLSDLAAADLDHDGSISKSDFVIYKLKQMGKISEIDILQISKQFDSLDHAMYGKITLADLMETV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3295 389 ProSitePatterns EF-hand calcium-binding domain. 334 346 IPR018247 -
Tpr4g3295 389 PANTHER OS01G0696100 PROTEIN 52 384 - -
Tpr4g3295 389 Gene3D - 196 333 - -
Tpr4g3295 389 Gene3D - 99 194 - -
Tpr4g3295 389 SUPERFAMILY Voltage-gated potassium channels 207 324 - -
Tpr4g3295 389 SUPERFAMILY Voltage-gated potassium channels 100 191 - -
Tpr4g3295 389 PRINTS Two pore domain K+ channel signature 148 176 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tpr4g3295 389 PRINTS Two pore domain K+ channel signature 268 277 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tpr4g3295 389 Pfam Ion channel 236 304 IPR013099 -
Tpr4g3295 389 Pfam Ion channel 112 189 IPR013099 -
Tpr4g3295 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 52 384 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3295 Tpr-Chr4 38914416 38916553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3295 73 387 Ion Channels AT4G18160 48.418 3.98e-102 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3295 K05389 - gmx:100789639 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3295 4 38914416 38916553 Tpr4g3295 4 38914416 38916553 ECH