Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3263 ATGGCTAGTAGTAGCAACCAAATTGTCTCTTCATCTAGAATGACATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGCAACAATTTCACTGATCACCTTTTTGGTGCTTTTCAAAGAAAAGGCATTGTTGCCTTCAAGGATGATACAAAGCTAGAGAAAGGGGAAGATATATCATCTGAGCTTCTAAAAGCCTTTGAAGGATCTCAAATTTTGATTGTTATCTTCTCGAGAAACTATGCTTCTTCCAGATGGTGCTTGCGGGAACTAGAAAAAATTGCTGAATGCAAAGTATTAGGACAAACTGTGCTACCTATTTTCTATGATGTCAGTCCATCTGAGGTACGAAAGCAAAGCGGAGATTTTGAAAAAGCCTTCATGGAGCATGAAGATAGATTCAAAGAAAATTTAGAGGAAGTGCAAAGATGGAGGGGAGCTCTAACAAAAGTAGCCAACCTCTCTGGTTATGATGTAAAGGATAAGCCAGAATATGCAGAGATTGAAAAAATTATTAAAAAGGTAACAAGCTTATTGGGTCACAAATTTTCAACATTACCTGGCGATATAGTTGGAATGCACTCACGAGTGGAAGAATTAGAAAACCTTATGAAGTTGGACTCCGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGCGGAATAGGGAAGACAACTCTTGTTGATGCTTTGTATGCTCGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGATGTAAGTAAAACTTATGGAGGTTATGGCCCAATAGGAGTGCAAAAGCAACTTCTTTGTCAAACTCTAAAAGAAGAAAATCTTCAGATATACAATCCTTATATGGCATCTAATTTGATTCAAACTAGGCTATGTCAAGTAAAATCCTTTGTAATCCTTGATAATGTTGATCAAGTGGAACAACTGGATAAATTAGCCTTGAAACGAGAGTGGCTAGGCACGGGGAGCAGAATGATCGTAATTTCTAGAGATCGTCATATCTTGAGAGAGCATGGAGTAGATGGAGTTTATGAAGTTCAACTCTTGGATCATAGTAGTGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGACTGGTTACACAGACTTCACATATGGTGTACTAAATTATGCCCATGGCCTTCCATTAGCAATTAAAGTATTGGGCTCATTTTTGTATGGTCGAGATGTCTCTGAATGGAGAAGTGCATTGGAAAGATTAAGAGAGAATCCAATGGCAGGTATTACGGATGTACTCCGAATTAGTTTTGATGGGCTATTGGAGACAGAAAAGGGTATATTTCTTGATATTGCTTGTTTCTTTCGTGGAAAAAGAGAGACATATGTGAAGAAATTTTTAGATATTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCCATGATAAGTCATTCATTACTTTTCAGTATGGGCATATTTTTATGCATGATTTATTCGAAGAACTTGGCAAGAATATCGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAATAGATTGTGGGACTACAAGGATTTCTACAAAGTTATGTCAGAAAACATGGAATCAGAAAACCTTGAAGCCATAGTTCTGCAGCCTGATCCTTATGATCAAATTGATGAAATACAAGCAATGTCAACATTGAGGGCAGAAAGTTTAGCACAAATCAATCGCCTTAAATTGCTCATCCTGCAGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTACGTTGGGATAAATATCCTTTCACTTGTTTGCCGTCGAGTTTTAAGCCGGATAAACTTGTTGAACTGATCCTACCTCATAGCAACATCAGGCAACTATGGGAGGGCACAAAGCCTCTTCATAATTTGACACGTCTTTATCTCTCTCACTCGAAAAATCTTATTATGATGCCAAGTTTTTTCGAGATTCCAAATCTTCAGTTCCTAGATCTTGAAGGATGCATAAAACTTGTGCAGATTGATCCATCCATTGGTACCTTGAGAAGGCTTTCCAGATTAAATTTGAAAAATTGTACAAATCTTGTTAGTATTCCTAACAAAATTTTTGGTCTGAGTTCCCTTAAATATCTAAATCTCTCAGGCTGCCCAAATTTTTGGTTAGAGGGACAAAGAACAATAGAACATTTGGGGATGCTTGAAAACAATGAAATTACTACCCAATACCAACCAACATCCTTCATCTACAAGGTTTTGAAGTCACCCTTCCGATTTTTTATTTTTCAAAAAAGTAGAGATCCAATTGGTTTATTGTTACCTTTGGTGTCTCTTTTGTCATGTTTACAACATCTAGACCTAAGTTTCTGCAATCTTCTTCAAATCCCTAATGCTATTGGGTGGTTACACTGCTTAGAAACACTAAATTTGGGGGGTAACAATTTTGTTACATTACCTAGCATCAAAGAACTTTTTAAACTTAGAAAATTGAACTTGGAGCACTGTAAGCAGCTGAAATATTTACCTGAACTCCCATCAAAATCTGTTTTGCCAGTAAGAGAAACATATTATGGTAGGACCGTTGTATTAAATATTTTTGGTTGCCCCAGTTTAACTGACATAGAATGTTGTTATAGAATGGTTTTATCTTGGATGATACAACTCCTTAAGGTGCACATGAAATCCGATCTCCTTGAGATTCATATTGTCATTCCTAGAATGCAAATTCCAATGTGGTTCAATAAACAAAATGTGGGCAGTTCAATAAGCATGGAACCATTACCCAATATGGATGACAAGAATTTCATAGGTGTTGCTGTTGTTTGCTGCATAACACTTGTAGCACATGATGATCCATTTAGTTTAGATTATGAAAGGTCACCTTGGATTCGGTTTGGTATTAAAAATAAACGAGTAAACTCGTGTTGGTATTTCTATATTCACATACATCATGGAAAAGATCTGGTTACAGATGATTTACAACACCTGTGTCTAATTTTTATCACTAGGAAAGAACTTACTTATCTTACAAAGGGATTGCATGATATTATTGAATTGGAAGTTTCTGTTTACTGTCCCCATGGTTTGCATTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATTTCAGGAGGATCTGGAGCAATACATCTTCATCAGCAAGTTAGTTTTGGCTTTTACAATTTCAATGGCTTGTAGTAGCAACCAAATTGTCTCTTCATCTAGAATGACATGGAAATATCATGTGTTTGTGAGCTTCAGAGGTGAAGACACGCGCAACAATTTCACTGATCACCTTTTTGGTGCTTTTCATAGAAAAGGCATTGTTGCCTTCAAGGATGATATAAAGCTCAAGAAAGGGGAAGATATATCATCTGACCTTCTAAAAGCCATTGAAGGATCTCAAATTTTAATTGTTATCTTCTCGAGAAACTATGCTTCTTCCACATGGTGCTTGCGGGAACTAGCAAAAATTGCTGAATGCAAAGTATTAGGACAACCTGTGCTACCTATTTTCTATGATGTGAGTCCATCTGAGGTACGAAAGCAAAGCGGAGATTTTGAAAAAGCCTTTACGGATCATGAAGATAAATTCAAAGAAAACTTGGAGGAAGTGCAAAGATGGAGGGGAGCTCTAACACAAGTAGCCAACCTCTCTGGTTTTGATTTAAAGGATAAGCCAGAATATGCAGCGATTGAAATAATTATTAAAGTGGTAACAAGCTTATTGGGTCACAAATTTTCACCATTAGGTGACGATGTAGTTGGGATGCACTCACAACTGGAAGAATTAGAAAAGCTTATGATGTTGGACTCCGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGAGTGGAATAGGGAAGACAACTCTTGGTAAAGCTTTGTATGGTAGAATCTCTAATCAATTTGAAGCTTGCTGCTATATTGATGATGTAAGTAAAACTTATGGAGGTGATGGCCCAGTAGGAGTGCAAAAGCAACTTCTTTGTCAAACTCTAGAAGAAGAAAATCTTCAGATATGCAATCATTATATGGCATCTAATTTGATTCGAACTAGGCTATGTCGAATAAAATCCCTTGTAATCCTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTAGCCATGAAACGTGAGTGGCTAGGCACTGGGAGCAGACTTGTCATAATTTCTAGAGATTGTCATATCTTGAGAGAGCATGGAGTAGATGAAGTTTATCAAGTTGAACTCTTGGATCGTAGTAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGAAATCATGACCGGTTACACAAACTTGACAAATGATGTACTAAGATATGCCGATGGCCTTCCATTAGCAATTAAAGTGTTGGGCTCATTTTTGTATGGTCGAGATGTCTCTGAATGGAGAAGTGCATTGGAAAGATTAAGAGAGAAACCAATGGCAGGTATTATGGATGTACTCCGAATTAGTTATGATGGGCTAGACAATACAGAAAAGGGTATATTTCTTGATATTGCTTGTTTCTTTGATGGACATGAGGAGACATATGTGAAGAAATTTTTAGATATTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTCCATGATAAGTCATTCATTACTTTTCAGTATGGGCATATTTTTATGCATGATTTATTCAAAGAACTTGGCAAGAGTATCGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAATAGATTGTGGAACTACAAGGATGTCCACAAAGTTATGTCAGAAAACATGGAATCAGAAAACCTTGAAGCCATAGTTCTGGAGCGTTATTCTTCTGAAATTGATGAAATACAAGCAATGTCAACATTGAGGGCAGAAAGTTTAGCAAAAATGAATCGCCTTAAATTGCTCATACTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGGTATCTACGTTGGGATAAATATCCTTTCACTTGTTTGCCGTCGAGTTTTGAACCGGATAAACTTGTTGAACTGATCCTACCTCATAGCAACATCAGGCAACTATGGGAGGGCACAAAGCCTCTTCATAATTTGACACGTCTTTATCTCTCTCACTCGAAAAATCTTATTATGATGCCAAGTTTTTTGGAGATTCCAAATCTTGAGTACCTAGATCTTGAAGGATGCATAAAACTTGTGCAGATTGATCCATCCATTGGTACCTTAAGAAGGCTTTCCGAATTAAATTTGAAAAATTGTACAAATCTTGTTAGTATTCCTAACAAAATTTTTGGTCTGAGTTCTCTTAAATCTCTAAATCTCTCAGGCTGCCCAAATTTTTGGTCAGAGGGACAAAGAAAAATAGAACATTTGGAGATGCTTGAATTCAATGAAATTACTACCCAATACAAACCAACATCCTTCATCCACAAAGTTTTAAACTCACACTCCCGATTTTTTACTTTTCAAAAAAGTAGAGATCCAATTGGTTTATTGTTACCTTTGGTGTCTCGTTTGTCATGTTTACAACATCTAGACCTAAGTTTCTGCAATCTAGCTCAAATCCCTAATGCTATTGGGTGGTTACACTGCTTAGAAACACTAAATTTGAGGGGTAACAATTTTGTTACATTACCTTCCATCAAGAAACTTTTCAAACTTGAACAATTGAACTTGGAGCACTGTAAGCTGCTGAAATATTTACCTGAACTCCCATCAAAAACTGTCTTGCCAGTAAGAGAAACATATTATGTTAGGTCCGTTGTATTAAATATTTTTGGTTGCCCGAGTTTAACTGACATAGAATGTTGTTATAGAACAGTTTTTCCTTGGATGATACAACTCCTTCAGGCGTACATGAAATCCGATCTCCCAATTGATCAGATTGATATTGTCATTCCTAGAATGCAAATTCCAATGTGGTTCAATAAACAAAATGTGGGCAGTTCAATAAGCATGGGACCATTACCCAATATGGATGAAAAGAATTTCATAGGTGTTTCTTTTGCTTGCTGCATAACACTTGTAGCACATGATGATCCAACTATTGGTATTGGGTTCGGTATTAAAGTTAAAGAAAGTTTGTTTAGGAGGTACAATATTTACATACATCATGGAAAAGATCTGGTTACAGCACTTAATTTACCACACCTGTGTCTAATTTTTATCACTAGGGAAACATTTATTCACAATGTGAATCGTATATCAGAGGGATTGCGTGATATTATTGAATTGGAAGTTTATGGTTTGCATTTTGAGGTAAAAAATTGTGGTTATCGTTGGATATTTCAGGAGGATCTAGAGCAATTAAACTCACAAATGTATTTAACAAATCATTAG 6309 0.3634 MASSSNQIVSSSRMTWKYDVFVSFRGEDTRNNFTDHLFGAFQRKGIVAFKDDTKLEKGEDISSELLKAFEGSQILIVIFSRNYASSRWCLRELEKIAECKVLGQTVLPIFYDVSPSEVRKQSGDFEKAFMEHEDRFKENLEEVQRWRGALTKVANLSGYDVKDKPEYAEIEKIIKKVTSLLGHKFSTLPGDIVGMHSRVEELENLMKLDSDDDVRVVGICGMGGIGKTTLVDALYARISNQFEACCYIDVSKTYGGYGPIGVQKQLLCQTLKEENLQIYNPYMASNLIQTRLCQVKSFVILDNVDQVEQLDKLALKREWLGTGSRMIVISRDRHILREHGVDGVYEVQLLDHSSALQLFCRKAFKSDDIMTGYTDFTYGVLNYAHGLPLAIKVLGSFLYGRDVSEWRSALERLRENPMAGITDVLRISFDGLLETEKGIFLDIACFFRGKRETYVKKFLDIRGFHPEIGLRVLHDKSFITFQYGHIFMHDLFEELGKNIVREKSPKEPRKWNRLWDYKDFYKVMSENMESENLEAIVLQPDPYDQIDEIQAMSTLRAESLAQINRLKLLILQNLNFSGSLNFLSSELGYLRWDKYPFTCLPSSFKPDKLVELILPHSNIRQLWEGTKPLHNLTRLYLSHSKNLIMMPSFFEIPNLQFLDLEGCIKLVQIDPSIGTLRRLSRLNLKNCTNLVSIPNKIFGLSSLKYLNLSGCPNFWLEGQRTIEHLGMLENNEITTQYQPTSFIYKVLKSPFRFFIFQKSRDPIGLLLPLVSLLSCLQHLDLSFCNLLQIPNAIGWLHCLETLNLGGNNFVTLPSIKELFKLRKLNLEHCKQLKYLPELPSKSVLPVRETYYGRTVVLNIFGCPSLTDIECCYRMVLSWMIQLLKVHMKSDLLEIHIVIPRMQIPMWFNKQNVGSSISMEPLPNMDDKNFIGVAVVCCITLVAHDDPFSLDYERSPWIRFGIKNKRVNSCWYFYIHIHHGKDLVTDDLQHLCLIFITRKELTYLTKGLHDIIELEVSVYCPHGLHLEVKNCGYRWIFQEDLEQYIFISKLVLAFTISMACSSNQIVSSSRMTWKYHVFVSFRGEDTRNNFTDHLFGAFHRKGIVAFKDDIKLKKGEDISSDLLKAIEGSQILIVIFSRNYASSTWCLRELAKIAECKVLGQPVLPIFYDVSPSEVRKQSGDFEKAFTDHEDKFKENLEEVQRWRGALTQVANLSGFDLKDKPEYAAIEIIIKVVTSLLGHKFSPLGDDVVGMHSQLEELEKLMMLDSDDDVRVVGISGMSGIGKTTLGKALYGRISNQFEACCYIDDVSKTYGGDGPVGVQKQLLCQTLEEENLQICNHYMASNLIRTRLCRIKSLVILDNVDQVEQLDKLAMKREWLGTGSRLVIISRDCHILREHGVDEVYQVELLDRSNALQLFCRKAFKSDEIMTGYTNLTNDVLRYADGLPLAIKVLGSFLYGRDVSEWRSALERLREKPMAGIMDVLRISYDGLDNTEKGIFLDIACFFDGHEETYVKKFLDIRGFHPEIGLRVLHDKSFITFQYGHIFMHDLFKELGKSIVREKSPKEPRKWNRLWNYKDVHKVMSENMESENLEAIVLERYSSEIDEIQAMSTLRAESLAKMNRLKLLILWNLNFSGSLNFLSSELGYLRWDKYPFTCLPSSFEPDKLVELILPHSNIRQLWEGTKPLHNLTRLYLSHSKNLIMMPSFLEIPNLEYLDLEGCIKLVQIDPSIGTLRRLSELNLKNCTNLVSIPNKIFGLSSLKSLNLSGCPNFWSEGQRKIEHLEMLEFNEITTQYKPTSFIHKVLNSHSRFFTFQKSRDPIGLLLPLVSRLSCLQHLDLSFCNLAQIPNAIGWLHCLETLNLRGNNFVTLPSIKKLFKLEQLNLEHCKLLKYLPELPSKTVLPVRETYYVRSVVLNIFGCPSLTDIECCYRTVFPWMIQLLQAYMKSDLPIDQIDIVIPRMQIPMWFNKQNVGSSISMGPLPNMDEKNFIGVSFACCITLVAHDDPTIGIGFGIKVKESLFRRYNIYIHHGKDLVTALNLPHLCLIFITRETFIHNVNRISEGLRDIIELEVYGLHFEVKNCGYRWIFQEDLEQLNSQMYLTNH* 2103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3263 2102 PRINTS Disease resistance protein signature 1272 1287 - -
Tpr4g3263 2102 PRINTS Disease resistance protein signature 1348 1362 - -
Tpr4g3263 2102 PRINTS Disease resistance protein signature 1441 1455 - -
Tpr4g3263 2102 PRINTS Disease resistance protein signature 1754 1770 - -
Tpr4g3263 2102 Gene3D - 10 179 IPR035897 -
Tpr4g3263 2102 Pfam TIR domain 17 177 IPR000157 GO:0007165
Tpr4g3263 2102 Pfam TIR domain 1073 1217 IPR000157 GO:0007165
Tpr4g3263 2102 SMART AAA_5 1269 1408 IPR003593 -
Tpr4g3263 2102 SMART AAA_5 213 351 IPR003593 -
Tpr4g3263 2102 SUPERFAMILY L domain-like 1545 1929 - -
Tpr4g3263 2102 Pfam Leucine Rich Repeat 776 791 IPR001611 GO:0005515
Tpr4g3263 2102 SUPERFAMILY Toll/Interleukin receptor TIR domain 1066 1215 IPR035897 -
Tpr4g3263 2102 Gene3D - 1407 1490 IPR042197 -
Tpr4g3263 2102 Gene3D - 349 432 IPR042197 -
Tpr4g3263 2102 Gene3D - 1070 1234 IPR035897 -
Tpr4g3263 2102 ProSiteProfiles Leucine-rich repeat profile. 798 819 IPR001611 GO:0005515
Tpr4g3263 2102 SUPERFAMILY "Winged helix" DNA-binding domain 421 524 IPR036390 -
Tpr4g3263 2102 SMART till_3 1073 1212 IPR000157 GO:0007165
Tpr4g3263 2102 SMART till_3 17 156 IPR000157 GO:0007165
Tpr4g3263 2102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1500 IPR027417 -
Tpr4g3263 2102 Pfam NB-ARC domain 207 419 IPR002182 GO:0043531
Tpr4g3263 2102 Pfam NB-ARC domain 1259 1478 IPR002182 GO:0043531
Tpr4g3263 2102 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Tpr4g3263 2102 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 189 1054 - -
Tpr4g3263 2102 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1245 2089 - -
Tpr4g3263 2102 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 189 1054 IPR044974 GO:0006952
Tpr4g3263 2102 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1245 2089 IPR044974 GO:0006952
Tpr4g3263 2102 ProSiteProfiles Leucine-rich repeat profile. 1854 1875 IPR001611 GO:0005515
Tpr4g3263 2102 Gene3D - 1235 1400 IPR027417 -
Tpr4g3263 2102 Gene3D - 180 342 IPR027417 -
Tpr4g3263 2102 ProSiteProfiles TIR domain profile. 1072 1237 IPR000157 GO:0007165
Tpr4g3263 2102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Tpr4g3263 2102 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Tpr4g3263 2102 SUPERFAMILY L domain-like 560 880 - -
Tpr4g3263 2102 SMART LRR_typ_2 676 700 IPR003591 -
Tpr4g3263 2102 SMART LRR_typ_2 1852 1877 IPR003591 -
Tpr4g3263 2102 SMART LRR_typ_2 796 821 IPR003591 -
Tpr4g3263 2102 SMART LRR_typ_2 773 795 IPR003591 -
Tpr4g3263 2102 SMART LRR_typ_2 1829 1851 IPR003591 -
Tpr4g3263 2102 SMART LRR_typ_2 1732 1756 IPR003591 -
Tpr4g3263 2102 Pfam C-JID domain 1957 2091 IPR045344 -
Tpr4g3263 2102 Pfam C-JID domain 899 1041 IPR045344 -
Tpr4g3263 2102 Gene3D Ribonuclease Inhibitor 1586 1794 IPR032675 -
Tpr4g3263 2102 Gene3D Ribonuclease Inhibitor 543 735 IPR032675 -
Tpr4g3263 2102 Gene3D Ribonuclease Inhibitor 1815 1955 IPR032675 -
Tpr4g3263 2102 Gene3D Ribonuclease Inhibitor 759 907 IPR032675 -
Tpr4g3263 2102 Pfam Leucine Rich Repeat 1664 1683 IPR011713 -
Tpr4g3263 2102 Pfam Leucine Rich Repeat 608 627 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3263 Tpr-Chr4 38649775 38662890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3263 18 814 WRKY Transcription Factor Family AT4G12020 29.060 6.68e-77 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3263 - - mtr:MTR_4g080777 1489.55