Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3258 ATGAGCTTCTTTTCATGTTGTAAGTTACAAGAGAAGACCACCAAAAGCTCATTGAAGAAAAACCTTAAGGATTATCATAATTTTTGTTTCAGACCTGATCATGGCAAACGGAAGTACATAGTAGAGGAAGAAAATGAAAGATATGAAAAAGGAAATATTACCTCTAAGATATTTACTTACCATGAGCTATCTGTTGCAACTAAGAACTTTCATGTCCACAATATGGTTGGAGAAGGAGGCTTTGGGAGAGTGTACAAAGGGCGCATTAAAAGCTTAGATAATAAGGTTGTTGCTGTAAAGAAACTTAACAAAAATGGATTTCAAGGAAGCAGAGAATTTCTTGCAGAGGTTATGATTTTGAGTTTTTTGCACAACACAAACCTTGTTAACTTGGTAGGGTATTGTAGTGAAGGTGATCAAAGGATTTTGGTATATGAGTACATGTCAAATGGTTCTTTAGAAGATCACCTCTTTGAGTTACCTCCGGGAAAAAAGCCTTTGGACTGGTACACTAGAATGAAAATTGCAGAAGGTGCCGCGAGAGGACTCGAATACTTACACGCAGAAGCAAGTCCGCCGGTGATATACCGTGATTTCAAAGCATCAAACATACTATTAGATGAAAACTTCAATCCAAAACTATCAGATTTCGGACTTGCAAAGCTTGGTCCGACCGGCGATAAAACACATGTGTCCACTAGGGTGATGGGAACTTATGGCTATTGTGCACCTGAGTATGCCTCAACAGGTCAATTGACTACAAAGTCAGATGTTTATAGTTTTGGAGTAGTGTTTTTAGAGATGATCACAGGGAGAAGAGTACTTGATTTTTCAAGATCATCTGAAGAGGAAAACTTGGTCACTTGGGCATTACCACTACTCAAAAACAAAAGAAAATATACAACATTGGCTGATCCATTGCTAAAAGGGAACTACCCAATGAGGGGTCTATACCAAGCACTAGCAATTGCATCAATGTGTCTATTGGATGATGCTACTGCTAGACCTTTAATTGGTGATGTAGTCACAGCTCTTGGAGTTTTAGCAATGCATGTACAAGTTGGAAAACAAAAACATACAAAAGAAACTTATATTGAACAAGGAGAATGCAGTTGA 1116 0.3799 MSFFSCCKLQEKTTKSSLKKNLKDYHNFCFRPDHGKRKYIVEEENERYEKGNITSKIFTYHELSVATKNFHVHNMVGEGGFGRVYKGRIKSLDNKVVAVKKLNKNGFQGSREFLAEVMILSFLHNTNLVNLVGYCSEGDQRILVYEYMSNGSLEDHLFELPPGKKPLDWYTRMKIAEGAARGLEYLHAEASPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEMITGRRVLDFSRSSEEENLVTWALPLLKNKRKYTTLADPLLKGNYPMRGLYQALAIASMCLLDDATARPLIGDVVTALGVLAMHVQVGKQKHTKETYIEQGECS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3258 371 ProSitePatterns Protein kinases ATP-binding region signature. 76 101 IPR017441 GO:0005524
Tpr4g3258 371 CDD STKc_IRAK 76 345 - -
Tpr4g3258 371 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 371 - -
Tpr4g3258 371 Gene3D Phosphorylase Kinase; domain 1 39 147 - -
Tpr4g3258 371 PANTHER OS07G0668900 PROTEIN 1 371 - -
Tpr4g3258 371 Gene3D Transferase(Phosphotransferase) domain 1 148 368 - -
Tpr4g3258 371 SUPERFAMILY Protein kinase-like (PK-like) 52 345 IPR011009 -
Tpr4g3258 371 Pfam Protein kinase domain 70 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3258 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Tpr4g3258 371 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3258 Tpr-Chr4 38623551 38626686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3258 1 349 Glycoside Hydrolase AT3G07070 57.341 1.48e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tpr4g3258 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3258 - - gmx:100798032 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3258 4 38623551 38626686 Tpr4g3258 4 38623551 38626686 ECH
Tpr3g4198 3 46663715 46666538 Tpr4g3258 4 38623551 38626686 PCT