Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3227 ATGGCTCCTTCTACTGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTTTCTTCACATCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAACTTTTCAAAGGTGGGTCCAATAGAGGAAGGAGTGGTCGTCATCTTCATGATCCTTCTGAGGAAAGCTTGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAAAAAGAAGATTTAGGCCATGCAATGTCACTTTCTTCAGGTGACGATATGAAGCGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGAAAATGATGAAGATTATGGAAAGTCACTTCATGATAACTTTAGCTCATCTGCACATCCTCCATATGCTCCTGCACCATTTTATCCCACTGAATATAGAAGAATATGCGGTGGCTGCAACCAAGACATAATATATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGATTGCTTTCGATGCCACTCTTGTCGCTATCCTATTACGGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACTCATCCAAAATGTGAAGTTTGTTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCTTCTCATGAATATGATAATACAGGTCGCTGTTGTAGTTGCGAAAGATTAGAGCCTCGCAATATAAAGTACTATCGACTCGAGGACGGGCGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATAGATCAGCAAGTTCCAATGCTTCTTGTTGAGAGAGAAGCACTTAATGATGCTATTGTTGGAGAGAAAAGTGGATTTCATCATTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAACAGACTGTAACCAGTATACATAGAAGGCCAAGAATTGGAGGTCATAGACTTGTTGGAATGAGAACTCAGCCTCAAAAGCTGACAAGAAAATGTGAAGTTACTGCAATTCTTGTTCTATATGGTTTACCAAGGTTGTTGACAGGTGCTATACTCACGCATGAATTGATGCATGCATGGTTACGCCTTAAAGGTTATCGCAATCTCAATCCTGAAGTAGAGGAAGGAATTTGTCAAGTTCTTTCATATCTGTGGCTTGAGACAGAAGTTATGCCAACAAACTCTAATTGTATGCCATCAACATCCACAGCTGCTTCTTCTTCGTCCTCCTCTTCATCATCAAAGAAAGGTGCACAGTCTCAGGTTGAAAATAAATTGGGTGAATTCTTCAAGTATCAAATTTTCAATGATTCTTCCCCAGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAGTATGGTTTACGTAGTACTCTTGATCATATTCGTTTGACTGGTTTTTTCCCTGTGTAA 1524 0.399 MAPSTDINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHLHDPSEESLSWRAPSRALDDRARAQKEKEDLGHAMSLSSGDDMKRPNAHQGYRWGEENDEDYGKSLHDNFSSSAHPPYAPAPFYPTEYRRICGGCNQDIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTGRCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNDAIVGEKSGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILTHELMHAWLRLKGYRNLNPEVEEGICQVLSYLWLETEVMPTNSNCMPSTSTAASSSSSSSSSKKGAQSQVENKLGEFFKYQIFNDSSPAYGGGFRAANEAVNKYGLRSTLDHIRLTGFFPV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3227 507 PANTHER PROTEIN DA1-RELATED 2 20 507 IPR045218 -
Tpr4g3227 507 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 507 - -
Tpr4g3227 507 CDD LIM_DA1 142 194 - -
Tpr4g3227 507 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Tpr4g3227 507 Pfam Protein DA1 291 502 IPR022087 -
Tpr4g3227 507 MobiDBLite consensus disorder prediction 432 452 - -
Tpr4g3227 507 MobiDBLite consensus disorder prediction 43 84 - -
Tpr4g3227 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Tpr4g3227 507 MobiDBLite consensus disorder prediction 46 84 - -
Tpr4g3227 507 Gene3D Cysteine Rich Protein 129 199 - -
Tpr4g3227 507 Pfam LIM domain 142 195 IPR001781 -
Tpr4g3227 507 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Tpr4g3227 507 SMART lim_4 141 193 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3227 Tpr-Chr4 38278250 38283061 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr4g3227 DA1-like 1.5e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3227 - - gmx:100784976 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0877 7 7739368 7749057 Tpr4g3227 4 38278250 38283061 PCT