Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3209 ATGGAGGGATTTCACTCTAATCAATACTGGTTATGGATGAAGAGAAGACAAGTTGAAACACCAATAGAATCTTGGGAAGAAAAAGCTTTTGCGGAAGATGCAGCTAGGAATATACTTAATGGTAGCATATGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGGAGAGATAGAGCTAGACTCAAACAAAATCTTAGCCCTCATAATGAAATTCAAAAGAATGATGATTTCAAGTTTTCAACAAACTCATCACTAGGTAATAATTATTTTTCTGCAAAAGTGTCATCTCAATTTAAACCTTGTTCTAGAAGAAGATCACTTTCACCTTCTAGAATGATTTCAACTATAGTTAATGGAAGAGAAGAAAATTTTAAGGATTGTGTTGAAACAAGTTTGTCTTTGGGTTTGGGATTGACTTCGATGTTTGGACAAAAATCATCGACCATTCTGTTGGGGAGTCTGGGGGAGCGTCAGAAGCAACATCATATTTCTTGTGAGGAAAAAGGTATGATTAGTTGTAAGAGATTGAAGACTAATAATATTTCTTCATTGCCTTCTGTTTTTCTCAAGACATGTTCAAATGATCATCATAGGTTCATGGATTTTCAACCTACAGAAATTGTTCTTGGAGTTAATCATGGAATGGAAGATTTAGATCTTGAACTTAGGTTAGGGAAACAACAAAAGGTTATTAAGTAG 750 0.3467 MEGFHSNQYWLWMKRRQVETPIESWEEKAFAEDAARNILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHNEIQKNDDFKFSTNSSLGNNYFSAKVSSQFKPCSRRRSLSPSRMISTIVNGREENFKDCVETSLSLGLGLTSMFGQKSSTILLGSLGERQKQHHISCEEKGMISCKRLKTNNISSLPSVFLKTCSNDHHRFMDFQPTEIVLGVNHGMEDLDLELRLGKQQKVIK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3209 249 Gene3D Classic Zinc Finger 45 103 - -
Tpr4g3209 249 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 248 - -
Tpr4g3209 249 SUPERFAMILY beta-beta-alpha zinc fingers 46 76 IPR036236 -
Tpr4g3209 249 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Tpr4g3209 249 PANTHER OS07G0101800 PROTEIN 2 248 - -
Tpr4g3209 249 Pfam C2H2-type zinc finger 49 73 - -
Tpr4g3209 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Tpr4g3209 249 SMART c2h2final6 49 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3209 Tpr-Chr4 38077109 38077912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3209 10 76 C2H2 Transcription Factor Family AT4G17810 63.768 1.02e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g3209 zf-C2H2_6 2.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3209 - - lja:Lj0g3v0352099.1 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3209 4 38077109 38077912 Tpr4g3209 4 38077109 38077912 ECH
Tpr3g0080 3 1028910 1030560 Tpr4g3209 4 38077109 38077912 PCT