Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3207 ATGACTTATTTCACTAACAATCCATCCTTCCTGGTTGGTCTCAAAGTTCTTGCAGTTGATCACGACATCGGTGCTCTCTGCACTATACGGGACATATGCAATGGCTTGTGCTATCAAGTGATCACTTGTTGCACTATTTCTGATGCAAGGAATTACTTGTTCAACCAAAACTTTGATATCATTCTTATTGAAGCTAATATGCCAAGCAATGATACTTTTGATTTTGTTGGACAAATTACTTCACATTTTCCTGTCATCATGATGTCTCTTGATCCCACGCCTTCTTCCGTTATGGATTCTATTACCCAAGGGGCTTGCGCATTCTGGTCCAAGCCCTTGGATGAGAACCAATTTAAGATCATGTGGCAACATCTTGTACGGAAGGCTTTGAGCGAAACTCCTGAACTTCCTCAAACCTTGGAGGTTAAAGGTGGAAAAAAACGAGGAAGAGAAGATGTTGATTTACCAAAACAACCGCTTCCAAAGAAAAGCCGTTTGTCATGGACACCCGACTTGGACAAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAGTATTAATGCAACACCCAAAAAAATTCTTAAGCTGATGAACTTTCCAGATTTGACAGCAGGGCAAGTAGCTAGCCATTTACAGAAATATAGGAAGTATTTAAAAGGGGAAATAAAAAAATCAAAGTTCAGTAGGCTATCTGCTTTTCAAGGTCATGATGAAATTCCTACACAAGAACAACATTTGACGGAAATTGGTGAATGCGACATTTTTTTTGACCTGTCTGAATTGTTCCCAGATCTTGTCGATAACTTGTAA 816 0.3934 MTYFTNNPSFLVGLKVLAVDHDIGALCTIRDICNGLCYQVITCCTISDARNYLFNQNFDIILIEANMPSNDTFDFVGQITSHFPVIMMSLDPTPSSVMDSITQGACAFWSKPLDENQFKIMWQHLVRKALSETPELPQTLEVKGGKKRGREDVDLPKQPLPKKSRLSWTPDLDKQFLSAVNQLGVNSINATPKKILKLMNFPDLTAGQVASHLQKYRKYLKGEIKKSKFSRLSAFQGHDEIPTQEQHLTEIGECDIFFDLSELFPDLVDNL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3207 271 Pfam Response regulator receiver domain 16 118 IPR001789 GO:0000160
Tpr4g3207 271 Gene3D - 160 222 - -
Tpr4g3207 271 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 232 - -
Tpr4g3207 271 SUPERFAMILY CheY-like 13 132 IPR011006 -
Tpr4g3207 271 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 163 218 IPR006447 GO:0003677
Tpr4g3207 271 Pfam Myb-like DNA-binding domain 166 217 IPR001005 -
Tpr4g3207 271 SUPERFAMILY Homeodomain-like 161 222 IPR009057 -
Tpr4g3207 271 SMART REC_2 14 122 IPR001789 GO:0000160
Tpr4g3207 271 MobiDBLite consensus disorder prediction 137 160 - -
Tpr4g3207 271 MobiDBLite consensus disorder prediction 141 159 - -
Tpr4g3207 271 Gene3D - 11 131 - -
Tpr4g3207 271 ProSiteProfiles Response regulatory domain profile. 15 126 IPR001789 GO:0000160
Tpr4g3207 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 221 IPR017930 -
Tpr4g3207 271 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 232 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3207 Tpr-Chr4 38052175 38054856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3207 10 257 Response Regulator Gene Family AT2G25180 33.692 4.88e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr4g3207 Response_reg 2.9e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3207 - - mtr:MTR_4g021760 221.861