Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3203 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAATTCTTAAGGAGAAAGTGTGCTAGTGACTGTGTATTTGCTCCTTACTTTTCTTATGACCAAGCTTCAAGCCATTTTGCAGCTGTGCATAAGGTTTATGGTGCTAGTAATGTGTCGAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCTTATGAAGCATTGGCTCGCATGCAAGATCCTATATATGGCTGTGTTGCGCATATCTATGCATTGCAACACCAGGTTGCAAGCTTGCAAGAGGAGATAGGTATTCTTGGAAGTGTAATGGCAAATTATAATCCAAGTGTTAGTGTTGGGAATTGTGGAAATCATGTCCAAGCACCAATGGACTCAAACTTAAACAATGGAACACAATATTACCATAATCAAAGTTTTGAATCATACATGGATATGGAGCTATTTCCAAATGCACCTGGATTGGAAGAGCCTTTATATGGTGATTTCAACTCAAATCCATTAGAGAAATTCCTATCAGGAATTGATCAAGAAGGGTTCCTGAACCACCCTTGGTTCAAGCATAATGCAAACATGAAGAACTAG 597 0.392 MTGFGSSCGACKFLRRKCASDCVFAPYFSYDQASSHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIGILGSVMANYNPSVSVGNCGNHVQAPMDSNLNNGTQYYHNQSFESYMDMELFPNAPGLEEPLYGDFNSNPLEKFLSGIDQEGFLNHPWFKHNANMKN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3203 198 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Tpr4g3203 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 197 - -
Tpr4g3203 198 Pfam Lateral organ boundaries (LOB) domain 7 102 IPR004883 -
Tpr4g3203 198 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3203 Tpr-Chr4 38008203 38009374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3203 1 191 AS2 family AT5G06080 51.295 7.91e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g3203 LOB 2.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3203 K13945 - gmx:100809636 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3203 4 38008203 38009374 Tpr4g3203 4 38008203 38009374 ECH