Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3196 ATGTCTTCACATTGGTGTTACAGGTGCAACAAATTTGTTAGGGTATGGAGGCTAGGAATGCCAATATGTTTAGATTGTGATAGCGGTTTTGTTGAACAGCTCGAACATTCCGCACGTTCTCTCCATGAAGACGGTGGTCCTCAAAGGAGGTTTCCTATGTCGGCGGCCATGTACATGATGGGCCACAATAATAACAATTCCAATCAAAATTCTCGTAGACGCCGTTGCAGAAACAATATTAACGGAGATTATAATATTTCTGACCCAATCATCATGATCCGGGGTAGCGGATCATCTCGGGGTATGGGCCGTGAGGGCGAAGGGAATCGTGGGTTTGAACTTTTCTACGAAGATGGTGCCGGTACTGGTCTCCGACCATTGCCTCCAAGGATGTCAGATTTTCTTCTTGGATCTGGATTTGAAAGGGTGATGGAAAACCTTTCTCATGTCGAATCTAATCGAACTAGAAACGCGCGACATAATCAACAACAATTACCAGCATCAAAATCCGCGGTAGAATTGTTACCAATGATTAAAATTAATGAAAGTCATATGGAGATAGAATCACATTGCGCCGTTTGCAAAGAGATGTTTGAACTTGGCATTATGGCTAGAGAAATGCCATGCAAACACATATACCATGATGATTGCATACTTCCATGGCTTGCAATTAAAAATTCTTGTCCGGTATGTCGCCATGAACTTCCTTGTGAATCACAACAAAATAATAATAATAATCAAAATTTAGAAGAGAATGTTGGGTTGACGATTTATCGATTACCGGGTGGAGGGTTTGCCGTGGGAAGATTCTCCGGTGGAAGAAACGGCATTGAGGGTGGGGATGAAAGTGAAAGAGAGCTTCCTATTGTTTACACGGAGATGGATGGTGCATTTAACAATATTAGTGAACCAAGGAGGATATCATGGTCATTAACATCATCTAGAGAAAGGAGAGGAAGAAGTAGTGGAGGTGGATTTCGTAGAATGATGAACAATTTGTTTGGATGTTTGGGAGGTGGGGGTGCAGTTGGCAATAATCAACGTTATGTTCCCACTACTAGAGAGTTTTCTCCATCTATGACCATGAGAAATAATAGTGGATCATCTAATACCAATGAGAGTTCTTCTACACGTCAACGTAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCGTGGTAA 1185 0.4177 MSSHWCYRCNKFVRVWRLGMPICLDCDSGFVEQLEHSARSLHEDGGPQRRFPMSAAMYMMGHNNNNSNQNSRRRRCRNNINGDYNISDPIIMIRGSGSSRGMGREGEGNRGFELFYEDGAGTGLRPLPPRMSDFLLGSGFERVMENLSHVESNRTRNARHNQQQLPASKSAVELLPMIKINESHMEIESHCAVCKEMFELGIMAREMPCKHIYHDDCILPWLAIKNSCPVCRHELPCESQQNNNNNQNLEENVGLTIYRLPGGGFAVGRFSGGRNGIEGGDESERELPIVYTEMDGAFNNISEPRRISWSLTSSRERRGRSSGGGFRRMMNNLFGCLGGGGAVGNNQRYVPTTREFSPSMTMRNNSGSSNTNESSSTRQRRTWSMDVNGGIRPW* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3196 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 333 - -
Tpr4g3196 394 SMART ring_2 191 231 IPR001841 -
Tpr4g3196 394 Pfam Protein of unknown function (DUF1117) 253 353 IPR010543 -
Tpr4g3196 394 MobiDBLite consensus disorder prediction 354 384 - -
Tpr4g3196 394 CDD RING-H2_RNF126_like 191 232 - -
Tpr4g3196 394 MobiDBLite consensus disorder prediction 354 394 - -
Tpr4g3196 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 333 - -
Tpr4g3196 394 Pfam Ring finger domain 190 232 IPR001841 -
Tpr4g3196 394 SUPERFAMILY RING/U-box 176 238 - -
Tpr4g3196 394 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Tpr4g3196 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 238 IPR013083 -
Tpr4g3196 394 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3196 Tpr-Chr4 37909304 37910488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3196 126 249 C3H Transcription Factor Family AT5G01980 37.903 2.64e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3196 - K11982 gmx:100789228 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3196 4 37909304 37910488 Tpr4g3196 4 37909304 37910488 ECH