Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3186 ATGGGAAAGAAAAACAAAGCGATGAGAGAAAATAGCGACGGCACTATAAAACAAAGCCCCTTAACTCTTTTCGTTTCAAATTTACCCTATTCTTTTACAAAAGATCAGCTTGAAGAAACTTTCAGTGAAGTTGGACCTATTAGACGTTGTTTCATGGTTGCACAAAAGGGGTCTGACCAACATCGCGGTTTCGGTTATGTTCACTTTGCTGTTGAGAAAGACGCTAACACTGCTGTTGAGCTGAAGAATGGTTCATTAGTTGGTGGCCGAAAAATTTCAGTGAAGCACGCGATTCCTCGTCCACCCCGTGAAAAAAAATCAAAACCAGATCAAGAGGGCAAGATAGATGATCTCACAGAGTCAAAAAATGATGATAAAGACAATGGATTATCTGCAGTAGAGAAGTCTGTTTCAGTTCCAAAGGAAGAATCAGTTCCAAAGGAAGAAGGTTATGATTTTGTTAATGTGCATTTGATTAGCTTTACAAGCTGCTCATTTATATATTTATTGCTTTTTCTTAATATCATATTTTCATTTCTTTTAGAAGTGAAAGTTTTGAATAAACCGAAAAATTCAAGGAAGCCCGTGGAAATAAAAAAAGCAGCTCTTTGTAATGACGCAGCAGATGAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGGACTGTTATATTTGGTGGTCTCATTAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGATATTGGAACTGTGTGTTCTATCAAGTATCCCCTTTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGGTGTACTTCAGATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTGGTTCCGTTGCAAAATTGCATAAAAAAGAGATAGGAGGTGGAACTGTTTGGGCACGACAGCTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGAGATGCATTTTCATCTGCGGGGTCTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGATAGTACTACTACTGAGGATGATGTTGAGCATAGTGACGAACAATCTGATCATGGAGATGATAGTGATGTTGATGGTGTTGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGATTGCGTCCTCCTCTGCCAAAGACGTGTCTGCAAATAACGATTCTACATGTTCTGAAGAAAATAAGGAGCCAAAATCTAACGAAACTGTTAAGGGCGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTTTGCTATTTCTAAGCCCGGGACTTCCAGCAAGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAGTTTTTATAAGCAATATTCCCTTTGAATGCGATACTGAAGAAGTGAAGCAACGGTTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCAATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATAATGCAATTTCAACTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTTAAGGCTCTGGACAAGAAATCAGCTCATGAGAAAGAACTGGAGAAAGAAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGGCAAAACGTAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTAAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAAAAACAGTTTTCCCGTGGAGTTGCCTTTCTTGAATTTTCAGAGCATCAACATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCGATTGTGGAGTTTGCGCTTGATAATGTTCAAACGTTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCTCCTCGTGATGACAACAGAAACGAAAATGATAAACCCGACAATGCAGGAGTTTACACACATGGAGCCGACAGAAAACGAAAATCTCAAGAGCATGACAAACCAACAAAAGACTTGGGATTGAATTCAAATAATGAACAAGGCAGTAAAGTGGCAAATGGAAAACCTCCTCATGGAGACAAATCCAAAAGACAGAAAGGCAACCATAAGAGTACAAACACCGATGTGTTATCATCGAAAGAAAGTCCAAAAGCTTCAGTGAGTAAGTTAAAGAATAACCAAGATGGCCAGAATCACGGTGCTAAATTACACGAAGGTAAAAATACTGCCATTGACAGTAATAGTAGGAAAATATCAGGAAAGAAAGATGACGCGGTATATGGAAAGAGGAAGATGCAAAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGGCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTAGATAAGCTTGACATGCTTATAGAACAATATAAATCCAAGTTCTCACAAAAGGGTTCCCAAGGAAATGATGGTGAGAAAAAACCTCAACAGCTTAGAAAATGGTACCAATCATAA 3006 0.3972 MGKKNKAMRENSDGTIKQSPLTLFVSNLPYSFTKDQLEETFSEVGPIRRCFMVAQKGSDQHRGFGYVHFAVEKDANTAVELKNGSLVGGRKISVKHAIPRPPREKKSKPDQEGKIDDLTESKNDDKDNGLSAVEKSVSVPKEESVPKEEGYDFVNVHLISFTSCSFIYLLLFLNIIFSFLLEVKVLNKPKNSRKPVEIKKAALCNDAADEGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARGSVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEIRDAFSSAGSVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDDSTTTEDDVEHSDEQSDHGDDSDVDGVVEEDVPSEDDFDKEADIARKVLNNLIASSSAKDVSANNDSTCSEENKEPKSNETVKGADSKASKESDKVFAISKPGTSSKLSNPKETEDDLQRTVFISNIPFECDTEEVKQRFSAFGVVEYFAPVLHQLTKRPRGTGFLKFKTVEAADNAISTANAASGMGILVKGRPLKVFKALDKKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEKQFSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNAGVYTHGADRKRKSQEHDKPTKDLGLNSNNEQGSKVANGKPPHGDKSKRQKGNHKSTNTDVLSSKESPKASVSKLKNNQDGQNHGAKLHEGKNTAIDSNSRKISGKKDDAVYGKRKMQNQEQAGEKVSRKRAKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGSQGNDGEKKPQQLRKWYQS* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 489 514 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 976 1001 - -
Tpr4g3186 1001 Gene3D - 690 786 IPR012677 -
Tpr4g3186 1001 CDD RRM3_RBM28_like 539 620 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 92 143 - -
Tpr4g3186 1001 CDD RRM4_RBM28_like 691 789 - -
Tpr4g3186 1001 Gene3D - 472 636 IPR012677 -
Tpr4g3186 1001 Gene3D - 2 149 IPR012677 -
Tpr4g3186 1001 CDD RRM2_RBM28_like 317 393 - -
Tpr4g3186 1001 Coils Coil 617 644 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 802 1001 - -
Tpr4g3186 1001 SMART rrm1_1 692 784 IPR000504 GO:0003723
Tpr4g3186 1001 SMART rrm1_1 317 390 IPR000504 GO:0003723
Tpr4g3186 1001 SMART rrm1_1 22 95 IPR000504 GO:0003723
Tpr4g3186 1001 SMART rrm1_1 540 618 IPR000504 GO:0003723
Tpr4g3186 1001 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 394 IPR000504 GO:0003723
Tpr4g3186 1001 PANTHER RNA-BINDING PROTEIN 28 18 956 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 861 875 - -
Tpr4g3186 1001 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 691 805 IPR000504 GO:0003723
Tpr4g3186 1001 PANTHER RNA-BINDING MOTIF PROTEIN 14B 18 956 - -
Tpr4g3186 1001 SUPERFAMILY RNA-binding domain, RBD 312 397 IPR035979 GO:0003676
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 97 131 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 400 444 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 876 902 - -
Tpr4g3186 1001 Gene3D - 303 436 IPR012677 -
Tpr4g3186 1001 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Tpr4g3186 1001 SUPERFAMILY RNA-binding domain, RBD 539 770 IPR035979 GO:0003676
Tpr4g3186 1001 CDD RRM1_RBM28_like 22 100 - -
Tpr4g3186 1001 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 539 622 IPR000504 GO:0003723
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 809 844 - -
Tpr4g3186 1001 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Tpr4g3186 1001 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 387 IPR000504 GO:0003723
Tpr4g3186 1001 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 541 602 IPR000504 GO:0003723
Tpr4g3186 1001 SUPERFAMILY RNA-binding domain, RBD 20 302 IPR035979 GO:0003676
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 478 533 - -
Tpr4g3186 1001 MobiDBLite consensus disorder prediction 903 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3186 Tpr-Chr4 37699748 37707897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3186 320 395 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 2.96e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3186 K14573 - gmx:100791823 1283.47