Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3178 ATGACAATTGGGTTCATGGAGGTGCTTCTGGTGAAAGCAAAGGGTCTTCAACAAACTGATGTCTTTGCTCGCATGGATCCGTATGTTTTGTTACAATACAAAAGTCAAGAGAAAAAGAGCAGTGTTCTTCATGAGGGCGGCAGCAGTCCTGTATGGAATGAGAAGTTTGTATTCAGAGCGGAATACCCTGGATCAGGTGACCAGTACAAGCTCAACCTTAAAATCATGGACAAGGATGTTTTTTCTAGAGATGATTTTGTTGGTCAAGCCATAATCTATGTAAAAGATTTATTGGTGGAAGGAGTAGAGAACGGATCAGCTGAGCTTCGTCCTCGCAAGTATAGTGTGGTTCGAGCTGACAATTCTTATTGCGGTGAAATCGAAGTCGGTATAACTTTCACTCGAAAGGAAGATGAATATGCCGACAACGACATTGGAGGATGGAAGGATAGTGAATATTAA 462 0.4177 MTIGFMEVLLVKAKGLQQTDVFARMDPYVLLQYKSQEKKSSVLHEGGSSPVWNEKFVFRAEYPGSGDQYKLNLKIMDKDVFSRDDFVGQAIIYVKDLLVEGVENGSAELRPRKYSVVRADNSYCGEIEVGITFTRKEDEYADNDIGGWKDSEY* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3178 153 Gene3D C2 domain 3 135 IPR035892 -
Tpr4g3178 153 PANTHER C2 DOMAIN-CONTAINING 1 152 - -
Tpr4g3178 153 SMART C2_3c 5 106 IPR000008 -
Tpr4g3178 153 Pfam C2 domain 7 105 IPR000008 -
Tpr4g3178 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Tpr4g3178 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Tpr4g3178 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Tpr4g3178 153 PANTHER ELICITOR-RESPONSIVE PROTEIN 1 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3178 Tpr-Chr4 37622559 37625537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3178 3 109 C2H2 Transcription Factor Family AT4G21160 28.972 5.90e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3178 - - gmx:100500493 269.24