Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3177 ATGCGGAGGAACAGTCCAGGTGGTTACTACAGTCCTCCCCGGAGAGGATACGGCGGGAGGGGTGGAGGTAGGAGAGGATACGGTGGTGGTGGTGGTGGAGGTGGTGGAGGTAGGCGTAGGGAAAGCAACAATGGAAGTCTTTTGGTTCGGAACATTCCTTTAGATTGTAGACCTGAGGAGCTGAGAGCACCGTTCGAGCGATTTGGACCGGTTCGCGATGTTTACATACCCAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCATATGAGGCCTCCGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCACAGGACTAGTAGATCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGTTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAGCCGCTATCGCTCAAGGTCCAGGTCGTTCTCTCCTCCCCCAAGACGTGACTACTCTGTTTCTCCTAGAAGGCATGCAGAACGCCCTAGATCACCTAGAAGTCCTCCTAGAAGCCCTCCTAGAAGTCCTCTTGTGGAGCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTATGGCAATGGTGCTGATCAGAATCAAAGCAATGGATATGCTGAGAAATTGTACAAATCTGAGGCTGATCGAGGCCAGTGGAAGTCATCGGCACAAAGATCATCAAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCACCTAGACGTGGAAGATGA 867 0.504 MRRNSPGGYYSPPRRGYGGRGGGRRGYGGGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRSRYRSRSRSFSPPPRRDYSVSPRRHAERPRSPRSPPRSPPRSPLVERDGDHKRRSYSPAYGNGADQNQSNGYAEKLYKSEADRGQWKSSAQRSSRSPPGSRSRSRSVDLSPRRGR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3177 288 MobiDBLite consensus disorder prediction 257 278 - -
Tpr4g3177 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Tpr4g3177 288 SUPERFAMILY RNA-binding domain, RBD 41 151 IPR035979 GO:0003676
Tpr4g3177 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Tpr4g3177 288 MobiDBLite consensus disorder prediction 124 288 - -
Tpr4g3177 288 MobiDBLite consensus disorder prediction 1 46 - -
Tpr4g3177 288 SMART rrm1_1 46 119 IPR000504 GO:0003723
Tpr4g3177 288 MobiDBLite consensus disorder prediction 191 207 - -
Tpr4g3177 288 MobiDBLite consensus disorder prediction 140 187 - -
Tpr4g3177 288 Gene3D - 37 163 IPR012677 -
Tpr4g3177 288 PANTHER OS02G0252100 PROTEIN 22 286 - -
Tpr4g3177 288 MobiDBLite consensus disorder prediction 233 247 - -
Tpr4g3177 288 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3177 Tpr-Chr4 37618183 37621873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3177 35 107 Eukaryotic Initiation Factors Gene Family AT3G11400 35.616 5.45e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3177 K12900 - gmx:100804294 286.574