Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3175 ATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTTGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCATACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAATGGCTAGCTACTCTGTTAACTATGATTACCTAATAGTTATTTGTTTCTTATGTCATTGTGTTGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTGCACTACAGTTTGCCAAAGTTAAAATATTTAGAGGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAAGAAAGGGGTTAGCCATTGCTGGTATGTCAAACTCCGAAAAAAGTATTGAGCAAATTAATGCTATGAATGAGGTTGGAGTGTTTGATGTCTGCAAAGAGAATCCAATTGTTGAACTTTTTGAGTTAGAAGACGTTGAGTTTAAGGGCAATGATTTAGCTGAGTTTGTTGCATCTCATGAGGAAAGGTTGGCTTCAGTGCCTTCTGGTTGTGGATGTGTTGTTCCGCTGAAGCTAAAAAAGAGAAGGTGGAGGGGAAAGATGAATCTGATGATGCAACTTGCCAAGTCTATTGAAATTTTGTTCAAAAGAGTTATGCACTGTGATTCAAATCCGGAGATTTTGTTCGTTTCAAAACTGATAGCCACATAA 1110 0.3757 MATQFDMLCDVLPGHNSWKFKVCVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYHTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEMASYSVNYDYLIVICFLCHCVDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVALQFAKVKIFRGKVSIQDVMNTTRIFLDPEIKETSELRKGLAIAGMSNSEKSIEQINAMNEVGVFDVCKENPIVELFELEDVEFKGNDLAEFVASHEERLASVPSGCGCVVPLKLKKRRWRGKMNLMMQLAKSIEILFKRVMHCDSNPEILFVSKLIAT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3175 369 CDD RPA1_DBD_A_like 21 107 - -
Tpr4g3175 369 PANTHER REPLICATION FACTOR A 1, RFA1 22 259 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g3175 369 Gene3D - 113 259 IPR012340 -
Tpr4g3175 369 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 259 - -
Tpr4g3175 369 SUPERFAMILY Nucleic acid-binding proteins 5 108 IPR012340 -
Tpr4g3175 369 SUPERFAMILY Nucleic acid-binding proteins 146 255 IPR012340 -
Tpr4g3175 369 CDD RPA1_DBD_B_like 149 249 - -
Tpr4g3175 369 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Tpr4g3175 369 Gene3D - 5 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3175 Tpr-Chr4 37586741 37588603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3175 13 249 Core DNA Replication Machinery Family AT5G45400 25.514 5.92e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3175 - - mtr:MTR_8g062030 249.595