Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3174 ATGGGTTGTTGCTTTAGTGCTAGAATCAAAGCTGAAAGTCCTCCACGTAATGGTTCAAGTTCAAAGGACTGTAGCAAAGGAAATGGCTTGAGTCGACGAAGCAGTGGCAGTGGCAAGGTGTCCGCTCCGCCTACTGCTCCTCCAACACCTCGAACCGAGGGCGAGATTTTGAATTCTTCCAATATGAAGAGCTTCACTTTTAGTGAGCTAAAAACTGCTACAAGAAACTTCCGTCCTGATAGTGTGGTTGGTGAAGGTGGATTTGGAGCTGTATTTAAAGGGTGGATTGATGAGCACTCGCTTGTGCCGGTTAGACCGGGGACTGGAGTTGTCATTGCTGTCAAGAAGCTTAACCAAGAAGGTTTACAAGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGACAGCTGCACCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTCGAAGACGATCACCGCCTTTTGGTATACGAGTTTTTGACCAAGGGCAGTTTGGACAATCATTTATTTAGAAGAGCTTCTTACTTTCAACCGCTTTCTTGGACCATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGCGATGAAGCAAAAGTGATATACCGAGACTTCAAAACTTCAAATATATTGCTCGACTCAAGTTATAATGCAAAACTTTCCGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATTCGAGTCATGTCTCTACAAGGGTAATGGGCACGTATGGCTACGCCGCTCCTGAATATATGGCAACAGGTCATTTGACTAAAAAGAGCGATGTGTATAGCTTCGGTGTTGTGCTCCTTGAAATTATGTCCGGAAAACGAGCACTCGACACCAACAGGCCATCAGGGGAACACAATTTAATTGAATGGGCCAAACCTTACCTCAACAGCAAACGCAGAATCTTCCAAGTTATGGATGCTCGCATCGAAGGCCAATACTCATTGCGTCAAGCAGTAAAAGCAGCTAACCTGGCGGTTCAATGCTTGTCGGTTGAACCAAGATTTAGACCGAAAATGGACGAGGTTGTAAGAGCATTGGAGGAACTCCAGGGTTCCTCAGATGACCTGACCGGAAGAGTAGGAAGCTCTCGAGATCAAAATATTAGGAGTGTTCCTAGCTCGAGGAGTAATGGTCCTCGACAACAGAGAAGTAATAAACCAAGTGAAACAATAAATAAATGA 1221 0.4488 MGCCFSARIKAESPPRNGSSSKDCSKGNGLSRRSSGSGKVSAPPTAPPTPRTEGEILNSSNMKSFTFSELKTATRNFRPDSVVGEGGFGAVFKGWIDEHSLVPVRPGTGVVIAVKKLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCFEDDHRLLVYEFLTKGSLDNHLFRRASYFQPLSWTIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSSYNAKLSDFGLAKDGPAGDSSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDTNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYSLRQAVKAANLAVQCLSVEPRFRPKMDEVVRALEELQGSSDDLTGRVGSSRDQNIRSVPSSRSNGPRQQRSNKPSETINK* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3174 406 MobiDBLite consensus disorder prediction 13 42 - -
Tpr4g3174 406 CDD STKc_IRAK 83 362 - -
Tpr4g3174 406 Gene3D Transferase(Phosphotransferase) domain 1 163 379 - -
Tpr4g3174 406 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Tpr4g3174 406 MobiDBLite consensus disorder prediction 1 58 - -
Tpr4g3174 406 PANTHER KINASE 1B 32 400 - -
Tpr4g3174 406 PANTHER OS01G0588500 PROTEIN-RELATED 32 400 - -
Tpr4g3174 406 MobiDBLite consensus disorder prediction 368 406 - -
Tpr4g3174 406 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3174 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Tpr4g3174 406 SUPERFAMILY Protein kinase-like (PK-like) 54 360 IPR011009 -
Tpr4g3174 406 ProSitePatterns Protein kinases ATP-binding region signature. 83 116 IPR017441 GO:0005524
Tpr4g3174 406 MobiDBLite consensus disorder prediction 366 406 - -
Tpr4g3174 406 Pfam Protein tyrosine and serine/threonine kinase 81 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3174 Tpr-Chr4 37581258 37584650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3174 45 385 Glycoside Hydrolase AT3G07070 47.592 3.58e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr4g3174 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3174 - - gmx:100800735 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3174 4 37581258 37584650 Tpr4g3174 4 37581258 37584650 ECH
Tpr3g0108 3 1375540 1378355 Tpr4g3174 4 37581258 37584650 PCT