Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3162 ATGAGAACACCTTGTTGTGACAAAGAAAACATCAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTTATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGATCCATTCCTAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGTTGTAGGCTAAGATGGTTAAACTATTTACGACCAGACATCAAACGTGGAATTTTTGCTCAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGCAATCGGTGGGCACTCATAGCTGGAAGGTTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCATATTCGTAGAAAGCTAATCAAAATGGGAATTGATCCAAATAATCATAAGCTACACAAAGGTTTTCCTAGTCCTCATGTTTTTGCTGCGGGCACATCATCATCATCATGTGACAAGTCCATTAACAAATTAGAGATTAATAATAATAATAATAATAATAATAATAATAAAATCTCGTTCATCAAATCCAAATCATGTGATGATGAGTACATTAATAATAGTGTTTCTTTAACAAAGAAAGAAACATCATCTTTGAATCTTGATCTAACCATTGCTTTGCCTTCTCCAAATAAGTTTGTTATACCTAATAATTGTGAGTCTCGCAAGACTAGGGATATGGATATTGATCTTAATTGTTAA 687 0.3523 MRTPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPSPHVFAAGTSSSSCDKSINKLEINNNNNNNNNNKISFIKSKSCDDEYINNSVSLTKKETSSLNLDLTIALPSPNKFVIPNNCESRKTRDMDIDLNC* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3162 228 Gene3D - 13 65 - -
Tpr4g3162 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Tpr4g3162 228 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Tpr4g3162 228 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tpr4g3162 228 PANTHER MYB TRANSCRIPTION FACTOR 2 224 - -
Tpr4g3162 228 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Tpr4g3162 228 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Tpr4g3162 228 CDD SANT 71 111 IPR001005 -
Tpr4g3162 228 SMART sant 65 113 IPR001005 -
Tpr4g3162 228 SMART sant 12 62 IPR001005 -
Tpr4g3162 228 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Tpr4g3162 228 CDD SANT 15 60 IPR001005 -
Tpr4g3162 228 Gene3D - 68 130 - -
Tpr4g3162 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 224 - -
Tpr4g3162 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3162 Tpr-Chr4 37457298 37458917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3162 2 210 MYB Transcription Factor Family AT4G09460 49.765 4.29e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3162 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3162 K09422 - gmx:100306391 321.627