Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3158 ATGGCTAACAACAAACGTGAAATCATCCAAGATGATGAAACTTCAAGTGTGGAAGAAGGCAACCCTAACATCATGCAACTTTGTTGTTCATCAAATCAAACTATAACATTAATACAAAAGGTGATTGCAGAAATCATTGGAACATATTTTGTAGTATTTGCTGGGTGTGGTGCTGTAGCAGTGAACAAGATCTATGGTTCTGTCACATTTCCAGGGGTTTGTATAACATGGGGACTAATTGTAATGGTCATGTGTTACTCTGTTGGTCATATCTCCGGCGGCCATTTCAATCCAGTTGTTACCATTACTTGGACCCTCTTTCGCCGAATCTCAATTAAAGAGGCTCCGTTGTACATTTTCGCTCAGTTGCTCGGGGCGACACTTGCAAGTGGCACATTATCTATGATGTTTGATATCTCGACCAAAACTTATTTTGGAACGGTGCCTGTAGGATCAAATGGTCAATCTTTAGTTGCTGAAATCATCACCAGTTTTCTCTTGATGTTTGTCATTTCAGCGGTTTCCACAGACGAAAGAGCGGTGAATGACTTGGCAGGTGTTGCAGTTGGAATGACTATAATGTTAAATATGTTCATTGCTGGGCCTGTATCTGGAGGTTCTATGAACCCAGCAAGAAGTATTGGTCCTGCACTTGTGGTACATGTTTACAAAGGGTTATGGATATACGTGGTTGGTCCAATTGTCGGCGCCATAGCCGGAGCAATTGCCTATAACCTTCTTAGATCGGTAGGCAAGCCGAATTCAGAGTTCGCCGGAGAAGAGCCGTTGAGGAACATAATTGTAGGTTGA 810 0.4235 MANNKREIIQDDETSSVEEGNPNIMQLCCSSNQTITLIQKVIAEIIGTYFVVFAGCGAVAVNKIYGSVTFPGVCITWGLIVMVMCYSVGHISGGHFNPVVTITWTLFRRISIKEAPLYIFAQLLGATLASGTLSMMFDISTKTYFGTVPVGSNGQSLVAEIITSFLLMFVISAVSTDERAVNDLAGVAVGMTIMLNMFIAGPVSGGSMNPARSIGPALVVHVYKGLWIYVVGPIVGAIAGAIAYNLLRSVGKPNSEFAGEEPLRNIIVG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3158 269 Gene3D Glycerol uptake facilitator protein. 1 257 IPR023271 -
Tpr4g3158 269 PANTHER AQUAPORIN NIP2-1 8 256 IPR034294 -
Tpr4g3158 269 TIGRFAM MIP: MIP family channel proteins 43 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 CDD MIP 39 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr4g3158 269 SUPERFAMILY Aquaporin-like 35 252 IPR023271 -
Tpr4g3158 269 PANTHER AQUAPORIN NIP4-1-RELATED 8 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3158 Tpr-Chr4 37410021 37411570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3158 7 256 Major Intrinsic Protein MIP AT5G37820 58.984 3.03e-108 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3158 K09874 - gmx:100803763 355.91