Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3157 ATGGCACTAGCCAACAACAACATTATACATAGTTCAATCCTAAGCAACAAGTTTCAATCTTGTGTTTTTGATGAAACTACTATAGAGATTAACTCTATAATGTCTCATAAAAAATCTATGATTGAAGATGAAGATGGTTCACAAAGCACTAATGGATTAAGCAATGATTCAGCTTCAGCTACAACAAATTCTACTACCATTTGTGGTGGTAGCAAAAAAGGGTATGTTTATAACAACACAAGTTATGAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTACTACAATAATCTCATGCAAAGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGCTGGAATATGGTTTCCAATGAGAATAATTTGCAACAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGGATCCTATGGATCCATATTCAATAGTACAAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATACTCTGAACCAAATGTCCATTGTGATGATGATGATAGCCTTAAAGAGTCGGAAACACATGAATCGGTGTTGAAGAAGCGCCCATCAATGGGAGAGAATATGCAATCTGCCAATGCCAAGAAACCATGCACAAATGCAAGTAAAAAAGAAAAACCTAAGTCAAATCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCCAAGATGA 930 0.3613 MALANNNIIHSSILSNKFQSCVFDETTIEINSIMSHKKSMIEDEDGSQSTNGLSNDSASATTNSTTICGGSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMQSSESLLSFQQSWNMVSNENNLQQWNHVSPNFNNFETSSGSYGSIFNSTKEKQNGESSCGWLYSEPNVHCDDDDSLKESETHESVLKKRPSMGENMQSANAKKPCTNASKKEKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3157 309 SMART finulus 228 277 IPR011598 GO:0046983
Tpr4g3157 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 307 - -
Tpr4g3157 309 MobiDBLite consensus disorder prediction 40 61 - -
Tpr4g3157 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 307 - -
Tpr4g3157 309 MobiDBLite consensus disorder prediction 176 234 - -
Tpr4g3157 309 CDD bHLH_AtIND_like 223 285 - -
Tpr4g3157 309 Gene3D - 216 279 IPR036638 GO:0046983
Tpr4g3157 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 280 IPR036638 GO:0046983
Tpr4g3157 309 MobiDBLite consensus disorder prediction 195 209 - -
Tpr4g3157 309 MobiDBLite consensus disorder prediction 176 193 - -
Tpr4g3157 309 Pfam Helix-loop-helix DNA-binding domain 232 272 IPR011598 GO:0046983
Tpr4g3157 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Tpr4g3157 309 MobiDBLite consensus disorder prediction 45 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3157 Tpr-Chr4 37372649 37375498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3157 73 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.773 4.16e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3157 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3157 - - gmx:106795957 358.607