Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3150 ATGATAGCAATAGAGAAATCTCATATCTTTATTTTTATGTGTGGACAATTAAGGAAAACATATAGAAACCAAGTGCATATGGAGAAGAGTAAGACAAGATCAGGTGTGAGGAAAGGTGCATGGACATATGAAGAAGACAAGTTACTCAAATCTTGCATTAGAAAGTATGGTGAAAGAAAATGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGTCGAAAAAGTTGTAGGTTAAGATGGCTAAATTATTTAAACCCTACTATCAACAAAGAAAGTTTTTCTGAAGACGAAGTTGATATGATGTTAAGGTTACACAAACTCTTAGGAAACAGATGGTCATTGATTGCTGGAAGGCTTCCGGGTAGAACATCAAATTATGTAAAGAATTATTGGCATACACACTTGCGCAAGAAGGTGATTTCAAAAAAATTAGAAGAAAACAAAGAAAAAGAAAAACTTAAGGAAACCGTCAAACCTCATGAAATTATTAAACCTAAACCTCGAACTTTCTCAGCAAATTCACCGTGGTTAAATAGGAAGTACATTAATTTTGTAACACCAATAGTGGCAGTTTCGACAAAAGATGGAACTGTTGCAAAAGATAGTGACATAGAGAATACTATGATACCAATTAATGGTGATGTAGATTCTGCTGCACAACCATATACTGGAAATTCGACAACCATGTGGTGGGAAAATTTGTTAAATGTGAGCAATGACAAAATTGGCCTATGCTCTTTATTACAAGAGGAGGACTCCAAATATGTTAACTTTCTTAGTGAAGTCCCCAATGTCAATGATTGCAATTGGGAATCCAAAATCTATGAATTTGAATCTATTTTAGATATTTTAAATTAG 861 0.338 MIAIEKSHIFIFMCGQLRKTYRNQVHMEKSKTRSGVRKGAWTYEEDKLLKSCIRKYGERKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINKESFSEDEVDMMLRLHKLLGNRWSLIAGRLPGRTSNYVKNYWHTHLRKKVISKKLEENKEKEKLKETVKPHEIIKPKPRTFSANSPWLNRKYINFVTPIVAVSTKDGTVAKDSDIENTMIPINGDVDSAAQPYTGNSTTMWWENLLNVSNDKIGLCSLLQEEDSKYVNFLSEVPNVNDCNWESKIYEFESILDILN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3150 286 CDD SANT 93 136 IPR001005 -
Tpr4g3150 286 CDD SANT 40 85 IPR001005 -
Tpr4g3150 286 SUPERFAMILY Homeodomain-like 35 132 IPR009057 -
Tpr4g3150 286 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Tpr4g3150 286 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Tpr4g3150 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 35 181 - -
Tpr4g3150 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 89 IPR017930 -
Tpr4g3150 286 SMART sant 37 87 IPR001005 -
Tpr4g3150 286 SMART sant 90 138 IPR001005 -
Tpr4g3150 286 Gene3D - 92 163 - -
Tpr4g3150 286 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Tpr4g3150 286 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Tpr4g3150 286 Gene3D - 38 90 - -
Tpr4g3150 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Tpr4g3150 286 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 35 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3150 Tpr-Chr4 37302550 37304315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3150 35 236 MYB Transcription Factor Family AT1G66370 47.596 4.59e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3150 Myb_DNA-binding 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3150 - K09422 mtr:MTR_5g078860 276.174