Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3146 ATGGAGAATACCATAGGCGTGAGAAAAGGTGCATGGACATATGAGGAAGATAAGCTACTCAAGGATTGCATTAACAAGTATGGTGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGCAGAAAGAGTTGTAGACTTAGGTGGTTAAATTATTTAAGCCCCACCATCTACAGAGGAAGCTTTGCTGAAGATGAAATTGATATGATCATCAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACAGCTAATGATGTGAAGAACTATTGGAATGCACACTTGCTTAAGAAAGTGGTTGCAATGAAAGAAGAAGAGAAAAAAAATGAGAAACATAAGGAAACAACCATGAAAGCTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCAACCAATTGGTTGAAAGAGAAACATAATAATATTGTGTCACAACCAATATTATTGGCTTCAAATAAAGATGATACAATTCCTACATATCATGATGATCAATCAGAGATTATGGTTCCAAATCATATTGGTATAGATTGTGCTTCTTCATCAAAATCAAATCTAGGTAATGCGCCAATACCGTGTGCAATGTCGATGGACAGTTTATGGAACTTGGAGGAACCTGTAGCCGTAGGTAGTGAGATAATTGGCTCATGCTCTTCAGTTCATGAGGAGAATTATAATGATATGGAGTTTCCAAATGTTGATGATTCTTTTTGGGATTCCAATCTTTATGATTTCGATTCTCTTTGGGATCTTTAG 789 0.3701 MENTIGVRKGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLSPTIYRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTANDVKNYWNAHLLKKVVAMKEEEKKNEKHKETTMKAHEVIKPQPRTFSTNWLKEKHNNIVSQPILLASNKDDTIPTYHDDQSEIMVPNHIGIDCASSSKSNLGNAPIPCAMSMDSLWNLEEPVAVGSEIIGSCSSVHEENYNDMEFPNVDDSFWDSNLYDFDSLWDL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3146 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 157 - -
Tpr4g3146 262 Gene3D - 9 61 - -
Tpr4g3146 262 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Tpr4g3146 262 CDD SANT 67 107 IPR001005 -
Tpr4g3146 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 111 IPR017930 -
Tpr4g3146 262 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tpr4g3146 262 SMART sant 8 58 IPR001005 -
Tpr4g3146 262 SMART sant 61 109 IPR001005 -
Tpr4g3146 262 CDD SANT 11 56 IPR001005 -
Tpr4g3146 262 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 157 - -
Tpr4g3146 262 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Tpr4g3146 262 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tpr4g3146 262 Gene3D - 63 136 - -
Tpr4g3146 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Tpr4g3146 262 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3146 Tpr-Chr4 37147112 37166441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3146 2 143 MYB Transcription Factor Family AT1G66370 63.014 1.63e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3146 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3146 - K09422 mtr:MTR_7g017260 341.273