Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3145 ATGGAAAAGACAAGAGGTGTGAGAAAAGGTGCATGGACATATGAGGAAGATAAGCTACTCAAGGATTGCATTAACAAATATGGTGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGCCGGAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCTACCATTAATAGGGAAAGTTTTTCTGAGGATGAAGTTGATATGATGTTAAGGTTACACAAACTTCTAGGAAACAGATGGTCACTTATTGCTGCAAGACTTCCGGGTAGAACAGCTAATGATGTGAAGAACTATTGGCATACACACTTGCGCAAGAAAGTAGTACCAAGAAAAATAGAAGAAAAAAAGAAACCTATCGAAATTACCATAAAAGCTCATGAAATTATTAAACCTCAACCTCGAACTTTTTCATCTCATTCACTTTGGTTGAATGGGAAACATAATAATTTTGCAAAACCACCAATTGTGACGGTTTCGACAAAAGATGTTCCTGTAGCTAAAGATAGTGACAAGGAGTGTACTATGCTACCAATTAATGGTGATGGAGATAGTGCTGCACAACCATATGCTGAAAATTCCACAATGTCTACCATGTGGTGGGATAGTTTGTTAAATGTGAGCAATGACAAGATTGGTTCATGCTCTTTGTTACAAGAGAAGGAATATTCCAATTTAGAGTTTGAAAATGTTGAGAATTTTTTGAATGAAGACTCCAATATTAATGTCAGTGAGTGCTATTGGGAATCCAATATTTGTGAATTTGATTCTCTTTTAGATATCTTAAATTAA 801 0.3533 MEKTRGVRKGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMMLRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKVVPRKIEEKKKPIEITIKAHEIIKPQPRTFSSHSLWLNGKHNNFAKPPIVTVSTKDVPVAKDSDKECTMLPINGDGDSAAQPYAENSTMSTMWWDSLLNVSNDKIGSCSLLQEKEYSNLEFENVENFLNEDSNINVSECYWESNICEFDSLLDILN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3145 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Tpr4g3145 266 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 4 156 - -
Tpr4g3145 266 Gene3D - 2 62 - -
Tpr4g3145 266 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Tpr4g3145 266 SMART sant 8 58 IPR001005 -
Tpr4g3145 266 SMART sant 61 109 IPR001005 -
Tpr4g3145 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 156 - -
Tpr4g3145 266 CDD SANT 64 107 IPR001005 -
Tpr4g3145 266 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Tpr4g3145 266 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Tpr4g3145 266 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Tpr4g3145 266 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Tpr4g3145 266 CDD SANT 11 56 IPR001005 -
Tpr4g3145 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Tpr4g3145 266 Gene3D - 63 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3145 Tpr-Chr4 37128541 37130157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3145 2 141 MYB Transcription Factor Family AT1G66370 64.189 8.91e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3145 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3145 - K16166 mtr:MTR_5g078860 287.345