Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3136 ATGGAGATTCTGGGTCAAAAAGAAGAAATGCATTCTGTTGTACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGACTATGCTTTGAAGGTAAGGAAACCATATACTATCACAAAGCAAAGAGAAAAATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTATACGGCCGAGCATGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTAATGGAAACGATACAACGATGGTGGAGACAATTGAAATTCCGCCTCCAAGACCAAAGCGAAAGCCGATTCATCCTTATCCACGTAAACTAGTTGAGATCCCAAAGAATGAAATCAGCAACTTGGAACAGCCACTGAGGTCTAATTCTCTTGTGTCGTTGGATTTTGGTCAAGAAAACAACTCGCCTAAGTCGGTACTATCTGCAGTTGCTTCAGAAACCCTCGGTTTCTCTGATTCGGATACTCCAACCGGAAGTTTGTCCCCTGTCTCATCCATTAGTGCTGTCCATAAACATAGCTTTCCGCTTCTTGAGTCCAAATCATCATCATCCGAGGAAGATTTGTCACAACAAATAGATGAACTGAATGCCGATTCAGCTCATGATGAACAACCTCTAATGAAACTGGAGCTTTTCTCTAATGAGAGCGTCTTCACCAAAGACGACGAAGCAATAGAAGAATCGCCTTGTCGAACACTCAAACTTTTCGGAACAACTCTGCTAGTAAACGATACTTGCAAACCTTCATCTGCATCAACGGATGCATCAAAACCTGTACCTTCCATGCATCTTACGCAACAACTTCAGCGTAGATGTTCAGATATTAGTCTTGCAACCGTTGTTCCATCCATGCATCTTACGCAACAACTTCAGCGTAGATATTCAGATATTGGTCTTGCAACCGTTTCTCCTTGGTGGACTGTTTGCGACAATTCAGCCTTTAAGCCACCACACAACGAGCACGAGGGAGAAAATTCACATTCTAATCACGGAGAATGTGAAGATAAAGACATTCAAAAGGAACAATCTTGTGTTGGTTCTAACACGAGTTCAATAAATGACGGAGAAATCAATGAAAGAGAAAGCCAGTGTTCACCGGTGAGACATAAAACTTTGATGAAAGGGTTTGTACCATATAAAAGATGCATGTCAGAAAGAGAAAGCCATTGTTCAACAATAACAGATGAGAGGAGAGAACATCAACGTATGAGGCTTTCTTTATAG 1287 0.4079 MEILGQKEEMHSVVHVHKLLDQFSCGNDYALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTMVETIEIPPPRPKRKPIHPYPRKLVEIPKNEISNLEQPLRSNSLVSLDFGQENNSPKSVLSAVASETLGFSDSDTPTGSLSPVSSISAVHKHSFPLLESKSSSSEEDLSQQIDELNADSAHDEQPLMKLELFSNESVFTKDDEAIEESPCRTLKLFGTTLLVNDTCKPSSASTDASKPVPSMHLTQQLQRRCSDISLATVVPSMHLTQQLQRRYSDIGLATVSPWWTVCDNSAFKPPHNEHEGENSHSNHGECEDKDIQKEQSCVGSNTSSINDGEINERESQCSPVRHKTLMKGFVPYKRCMSERESHCSTITDERREHQRMRLSL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3136 428 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Tpr4g3136 428 CDD SANT 45 88 IPR001005 -
Tpr4g3136 428 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Tpr4g3136 428 MobiDBLite consensus disorder prediction 339 386 - -
Tpr4g3136 428 Gene3D - 45 92 - -
Tpr4g3136 428 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Tpr4g3136 428 SMART sant 42 90 IPR001005 -
Tpr4g3136 428 PANTHER PROTEIN REVEILLE 7-RELATED 19 415 - -
Tpr4g3136 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Tpr4g3136 428 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Tpr4g3136 428 PANTHER SWI/SNF COMPLEX-RELATED 19 415 - -
Tpr4g3136 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Tpr4g3136 428 MobiDBLite consensus disorder prediction 339 362 - -
Tpr4g3136 428 MobiDBLite consensus disorder prediction 363 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3136 Tpr-Chr4 36974596 36977885 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g3136 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3136 - - gmx:778060 460.299