Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3132 ATGATGATATCCCTGTATGATGGGAAAGAAGATGCTTATTGGTGGGTTCTTTGCACCGAAAAAATATTCAAGGAGCAAGGGACACCAGAGGCTATGAAATTGTGGAAAGCTGTTACGGCATTGAGAGGTCCTGCTCTACAATGGTGGCTCTGGCGGTCTCTTCGTCAGCCGCCGACAACTTGGAATGACTTCACCACGGTTTTTATTTGGCGTTTTAAACCTGAATGGAGAGATATTTTGCCGGTAGATGACGACGAGGAGGAGGAGCCAAAATTGGACTTGTCTATGTTGTCTGTGTCCAATGGTAGTAACAACAACAATAGCTCCGTTTCTGTGCTTATTTCCGACCCGCAAGTGTTCGATTGCTACAATTGTTCTCAAACCTTAACTGTTCCACTCTTTCAGTGTGATAATAGTCATATTGTTTGCTCTACCTGCTGTCCTAAACTTATGAACAAGTGTGGCAAGTGCTCATTGGGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATATATTGCAATCAATGGGAATGCCATGTCCCAATGAAATACATGGTTGCAAGGAGAGTATAAGTTACCTTGGAAATAGGAAGCATGAGGAATGCATCCATGAGCCATGTTGCTGCCCCCTTTTAGGTTGTAACTTTGTTGCATCTTCGGAAGTGTTGTCCACCCATTTCAGCCATAAACACGATGGTTCTCAAATAGAATTTTCTTATGGTCACTCCTTCATTGTCTCTTTAAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAATAATAGTACTATGCTTTTGGGAAATGCAGTCAATATTTGCCATATTGGTCCTAATTCTTCTGAATCCGAGTATAGTTATGATATATTGGCGAGGTCTCAGACATGCAAACTGAAATTACATTCTTCTGCAAAGAATGTTCAACGTGTTACTTTAGCAACTCTTTCATCGGAGTTCCTTGTCATTCCATCTGGTTCTTGTGAACCTCTCAAGCTAGAAATTTGCATAACCCCCTTGATGCAAATCTATGTAAAGACCCTGACTGGAACAATAATCTCCATGAGGGTTAAGACTTCAGACACGATAGTCGATGTGAAGAAGAAGATTCTTGACAAGGGGGGCTATGAAGTGCACGATCAACGTCTGATCTTTGCCGGTAAGCAACTAGAAGACACACGGACCGTTGCCAATTACAACATTCAAGACAAGTCAACCATCGACCTTGTAATCCGCCTCACTGGGGACTAG 1272 0.4175 MMISLYDGKEDAYWWVLCTEKIFKEQGTPEAMKLWKAVTALRGPALQWWLWRSLRQPPTTWNDFTTVFIWRFKPEWRDILPVDDDEEEEPKLDLSMLSVSNGSNNNNSSVSVLISDPQVFDCYNCSQTLTVPLFQCDNSHIVCSTCCPKLMNKCGKCSLGISSKRCKAIENILQSMGMPCPNEIHGCKESISYLGNRKHEECIHEPCCCPLLGCNFVASSEVLSTHFSHKHDGSQIEFSYGHSFIVSLKSNDETIVLQEENDGKLFILNNSTMLLGNAVNICHIGPNSSESEYSYDILARSQTCKLKLHSSAKNVQRVTLATLSSEFLVIPSGSCEPLKLEICITPLMQIYVKTLTGTIISMRVKTSDTIVDVKKKILDKGGYEVHDQRLIFAGKQLEDTRTVANYNIQDKSTIDLVIRLTGD* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3132 423 ProSiteProfiles Ubiquitin domain profile. 348 423 IPR000626 GO:0005515
Tpr4g3132 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 86 349 IPR044286 -
Tpr4g3132 423 PRINTS Ubiquitin signature 358 378 IPR019956 -
Tpr4g3132 423 PRINTS Ubiquitin signature 379 399 IPR019956 -
Tpr4g3132 423 PRINTS Ubiquitin signature 400 421 IPR019956 -
Tpr4g3132 423 SUPERFAMILY Ubiquitin-like 334 422 IPR029071 -
Tpr4g3132 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 227 IPR013083 -
Tpr4g3132 423 Gene3D - 345 423 - -
Tpr4g3132 423 ProSiteProfiles Zinc finger SIAH-type profile. 175 232 IPR013010 GO:0008270
Tpr4g3132 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 86 349 - -
Tpr4g3132 423 Pfam Ubiquitin family 350 420 IPR000626 GO:0005515
Tpr4g3132 423 Pfam Seven in absentia protein family 165 320 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr4g3132 423 SUPERFAMILY TRAF domain-like 179 345 - -
Tpr4g3132 423 SMART ubq_7 348 419 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3132 Tpr-Chr4 36920009 36922550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3132 348 422 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 64.000 3.63e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3132 K04506 - gmx:100778869 221.476