Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3129 TATTCTTCTTCTCTATACATTGATATGGATCTTCAACCTCTACCATTGCTAAGTAGCTTCCTAGGTTCAACATCACAACAACCTTTACAACAAAATGAAAATCACAAATCATGTTATAATCAAGCTGAGGATGATGACGTCACAGTGGCCTTACACATAGGCCTTCCTGACAATTCAATTGAATCACCAATTGAAAATGGTTTTGTGAATGTCCCAAATCATGTTCCTAACAATTATTGGATACCAACTCAAGAACAAATTCTCATTGGATTCAGTCATTTTTCTTGTCCAATTTGCCACAAAACTTTCAATCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAAAGGACCAGACTCGTTGAGAAGAACTCATCCGCGACCGCTATTAGACCTTCCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAACATCCAAGAGCTAAGCCATTGAAGGATTTCAGAACATTACAAACACATTACAAGAGAAAGCACGGGTCGAAGACATTTACGTGTCGAAAATGTGGGAAGCCTTTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAGCGTTGGCTTTGTATCTGTGGTTCTGATTTCAAACACAAGAGATCTCTTAAAGATCATATCAAAGCATTTGGATTTGGTCATAGCCCTTTTTCTTCTTCCTCTGATGGCATTTGA 720 0.3889 YSSSLYIDMDLQPLPLLSSFLGSTSQQPLQQNENHKSCYNQAEDDDVTVALHIGLPDNSIESPIENGFVNVPNHVPNNYWIPTQEQILIGFSHFSCPICHKTFNRYNNLQMHMWGHGSQYRKGPDSLRRTHPRPLLDLPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKTFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSDGI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3129 239 PANTHER ZINC FINGER PROTEIN WIP2 8 238 IPR043584 GO:0003700|GO:0010468
Tpr4g3129 239 Gene3D Classic Zinc Finger 93 116 - -
Tpr4g3129 239 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 8 238 - -
Tpr4g3129 239 SMART c2h2final6 141 173 IPR013087 -
Tpr4g3129 239 SMART c2h2final6 94 116 IPR013087 -
Tpr4g3129 239 SMART c2h2final6 178 198 IPR013087 -
Tpr4g3129 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Tpr4g3129 239 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Tpr4g3129 239 SUPERFAMILY beta-beta-alpha zinc fingers 88 116 IPR036236 -
Tpr4g3129 239 Pfam Zinc finger, C2H2 type 94 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3129 Tpr-Chr4 36899187 36900327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3129 47 235 C2H2 Transcription Factor Family AT1G34790 65.686 1.85e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g3129 zf-C2H2 0.00035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3129 - - cam:101514022 441.039