Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3127 ATGGTTATATCGGCAACGGCAACCCATATGGACGCTTCTGTCCATTCAACATTCGCCTCTCGCTATGTCCGGACATCCCTTCCCAGGTTCAAGATGGGGGAAAATTCGATCCCAAAGGAAGCTGCGTATCAGATCATAAACGACGAGCTGATGCTGGATGGTAACCCTAGGCTGAACCTTGCATCATTCGTGACCACGTGGATGGAGCCCGAATGCGACAAACTCATCATGGCTTCTATTAACAAAAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAACTCCAGAACCGGTGTGTTAACATGATAGCTCATCTCTTCAATGCACCACTTGAAGAGTCAGAACCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTAGCTGGATTAGCATTCAAGAGAAAGTGGCAAAACAGAATGAAAAATGCAGGGAAGTCTTGTGACAATCCCAACATTGTCACTGGTGCAAATGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAGGTGGAATTGAAAGAGGTAAAGCTGAGTGATGGATACTATGTAATGGACCCTGAAAAAGCTGTTGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATTCTTGGTTCCACGTTAAACGGAGAGTTTGAAGATGTCAAGCGCTTAAACGATCTCCTAATAGCAAAAAATGCTGAAACTGGTTGGGAAACTCCAATTCATGTAGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGTTAGAGTGGGACTTTCGTTTACCACTTGTGAAGAGTATTAATGTTAGTGGACACAAATATGGTCTAGTTTATGCTGGTATTGGTTGGGTCATTTGGAGAAGCAAAGAAGACCTTCCTGATGAACTCATCTTTCACATTAACTACCTTGGAGCTGACCAACCTACCTTCACTCTCAACTTCTCCAAAGGTTCAAGCCAAGTTATTGCTCAGTACTATCAACTAATTCGTTTGGGTTATGAGGGATATAGAAATGTGATGGAAAACTGCAGAGACAACATGATGGTACTTAAGGATGGACTGGAGAAAACGGGTCGGTTTAACATTGTATCCAAAGACGAAGGTGTACCATTAGTTGCCTTCACTTTGAAGGACCATAGCAACTTTAACGAATTCCAAATCTCTGATATGCTGAGACGCTATGGTTGGATAGTGCCAGCATACACCATGCCACCAGATGCACAACATGTAACAGTACTCCGTGTTGTGATCAGGGAGGACTTTTCGCGTACCTTTGCAGAGCGTCTTGTTATTGACATCACCAAGGTGGTCCATGAGCTGGACTTGGTTCCTGCAAGGGTAGTCAGTACCAACACCGTAGCAGTTTCTGGAGAAGAAGACGGAGAAGATGGTGACAAAGTAATAATTTCTAAGAGTGTTCTGGAGACTCAAAGGAAAATCACTACAGCTTGGAGGAAATTTGTGATGGACAGGAAGAAGACGAACGGTGTTTGTTAA 1509 0.4394 MVISATATHMDASVHSTFASRYVRTSLPRFKMGENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRKWQNRMKNAGKSCDNPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIAKNAETGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMMVLKDGLEKTGRFNIVSKDEGVPLVAFTLKDHSNFNEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTFAERLVIDITKVVHELDLVPARVVSTNTVAVSGEEDGEDGDKVIISKSVLETQRKITTAWRKFVMDRKKTNGVC* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3127 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tpr4g3127 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tpr4g3127 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Tpr4g3127 502 Gene3D - 1 65 - -
Tpr4g3127 502 Gene3D - 66 360 IPR015421 GO:0003824
Tpr4g3127 502 Gene3D - 361 448 - -
Tpr4g3127 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 - -
Tpr4g3127 502 SUPERFAMILY PLP-dependent transferases 14 444 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3127 Tpr-Chr4 36872746 36877986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3127 1 502 Calmodulin-binding Proteins AT5G17330 83.665 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3127 K01580 - gmx:100787167 906.746