Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3110 ATGAAACAAAACATTGATCTTGAAGTAGAAGCTTATGCAGAATATGAATCTGATATTACAAGCCAAGTTGCTTCTAATGTATCAACTCAAGAAACCTCTTCCAACATATCAAATCCAATAGGGATTAATCTTAATCATCCTAATTTAGATGATAATGATATATCTCTTGACTTAACTCTCAACTTCAAGAACAATGAGTTAAGGGATTCAAATTCAATAGGATTCTCGATCTCAAGCACTTCTGAGAGCAGCAATGAACCTGCATCAGCAACAATTCAAAGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGCTCACAAGCTCTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATTTTTTCTGATAGGTATAATGCTAGTTTAGCATCTCTACCTTTACATGGATCTTTTAGATCATTAGGGATAAAAGCACACTCTTCAATGCACTATGGTTACTCAGTACCAACAACAATTCGGCCTCATAATCATCATGAGACGAAAAACAATACGAAATTCGAACAAGGGTGTGTTGGTTTTCCAATATTCTTGGAAGATGAGGAGTCAGAGTTGTTATGGCCTGGTAGTTTTCGACAGGCGTCCGAGGCAGGTGATGATGGACAACAGAATTTCATACTCACTGAGATGAATCCATCTGTAGACAGAGAAAAATCTACACCTGATTTGACATTGAAACTTTGA 741 0.3657 MKQNIDLEVEAYAEYESDITSQVASNVSTQETSSNISNPIGINLNHPNLDDNDISLDLTLNFKNNELRDSNSIGFSISSTSESSNEPASATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGYSVPTTIRPHNHHETKNNTKFEQGCVGFPIFLEDEESELLWPGSFRQASEAGDDGQQNFILTEMNPSVDREKSTPDLTLKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3110 246 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 246 - -
Tpr4g3110 246 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Tpr4g3110 246 PANTHER ZINC FINGER PROTEIN JAGGED 1 246 IPR045320 GO:0003700
Tpr4g3110 246 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Tpr4g3110 246 Gene3D Classic Zinc Finger 75 141 - -
Tpr4g3110 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3110 Tpr-Chr4 36678548 36681126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3110 78 246 C2H2 Transcription Factor Family AT1G66140 48.259 1.05e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g3110 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3110 - - gmx:100788768 312.383