Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3109 ATGAAGAAAAACACCAACACCAGCATCATCATGCTCATAAACCCTTTAACTTTTTTCTTATTCTTCTCCTTCTTTACCCTCTTCACTTACTCCCAAAACGACGACGTTTCAGTTATGCAAACACTCAAAACAAATCTCAACCCACCCATTTCACTTGGTTGGTCCGACCCGGATCCATGTAAATGGAATCACGTTACTTGCTCAGACGAAAAACGGGTCACCCGAATCCAAATCGGTCGTCAGAATCTTCAAGGTACACTCCCTCAAACTCTTCAAAACCTAACTCAGTTAGAACACTTGGAGCTTCAATTCAACAATTTCTCTGGTCCTATTCCGAGTTTACACAATTTAAACTCTCTTCAAGTTTTCATGGCGGGTAGTAACAGCTTTTCAGCAATTCCAGAAGATTTTTTCGCCAATAAGTCTCAGCTTGTTACTGTAGAGATTGATGACAACCCTTTTGAGCCTTGGGAGATTCCTTTGTCTCTAAAAGACGCTTTGTCACTAAGGAATTTTTCTGCTAATAATGCTAATGTTAAGGGTAAGTTACCGGATTTTTTTAGTGATGAAGTGTTTTCTAGTTTGACCCTTTTGCATTTAGCTTTCAATAAACTTGAGGGTGGGTTGCCAAAGAGCTTTTCTGGGTTAAATGTTCAGTCTTTGTGGTTGAATGGTCAGAAGAGTGATTCTAAGCTTAGTGGGTCAGTTGATGTTTTACAGAATATGACTTCTTTGAGTGAAGTTTGGTTGCATACTAATAAGTTTAGTGGCCCTTTGCCTAGTTTTGAAGGGTTGGAAAGTTTAAAGGTTTTGAGTTTAAGGGATAACTCTTTCACCGGTGTTGTTCCGAGTTCATTGGTTAGCCTTAAATCACTTAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCAATGCCGGTTTTTGGTGCTGGAGTTGAGGTTGATAATATTAAGGATTCTAATAGTTTTTGTTTGTCTAGTCCTGGTGATTGTGATCCTAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGGGTATGGGTTATCCTTCGAGGTTTGCTAATGATTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGGATTACTTGTAGTGATGGGAACATTAGTGCTGTTAATTTTCAAAAGATGGGTCTTAGTGGTGTGATATCTCCTGAGTTTGCTAAGCTTAAATCGCTGCAAAAACTTATTCTTTCTGATAACAATCTTACCGGTTCGATTCCGAATGAGCTTACTACTTTGCCTATGTTAACTAAATTGAATGTTGCTAACAACCATCTCTTTGGAAAAGTACCGAATTTTAGGAGCAATGTGATTGTGACTACTATTGGGAACATTGATATTGGGAAGGATACAAGCAGCTTTGCCCCTCAAGGTTCTGTGTCTTCTAATGGTACTGATGCAAGTGGTGGAAATGGTGGGAGTAATGGAAATGATGGCAAAAAATCTTCTTCTCATGTAGCTTTGATTGTGTTTGCTGTGGTTGGGGCTGTTTTTGTTGCATCTTTGATTGGTTTCTTGGTTTTCTGCTTGCTTAGGATGAAGCAAAAGAAGTTAAGTAGGGTTCAAAGTCCAAATGCACTAGTTATTCACCCTCGACATTCTGGATCAGATAATGAAAGTGTGAAGATAACGGTTGCAGGTTCGAGTGTCAGTGTTGGAGGTGTGAGTGAAGCCCACGCCGTACCCAATAGTGAAATGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTAATATCTATACAAGTTCTGAGGAGTGTCACAAACAATTTCAGCGCGAAAAATATATTGGGACAAGGAGGTTTTGGAACTGTTTATAAAGGTGAACTCCACGATGGTACAAGAATCGCAGTGAAAAGAATGGAGTGTGGAGCAATTGTTGGGAAGGGTGAAGCTGAATTTAAGTCTGAAATTGCGGTTTTGACAAAGGTTCGTCATAGGCATCTTGTTACTCTTCTTGGATACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACCCTAAGTAGGCATATTTTTAATTGGCCAGAAGAAGGACTCGAACCACTTGCATGGAATAGGAGACTAATCATTGCCTTAGATGTGGCAAGGGGCGTTGAGTACCTTCATAGCCTGGCTCATAAAAGCTTCATACACAGAGACTTGAAACCTTCAAACATTCTTCTTGGGGATGATATGAGGGCAAAGGTTGCTGATTTTGGTCTTGTGCGTCTCGCTCCAGAAGGGAAAGCCTCAATTGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCTCCAGAGTATGCAGTTACCGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATAACCGGAAGAAAAGCACTTGACGATAGCCAACCTGAGGATAGCATGCACCTTGTAACTTGGTTCCGCAGAATGTACGTAGATAAGGACTCGTTCCGCAAAGCAATTGACCCGACAATCGATATCAATGAAGAAACACTTGCTAGTATTCACACAGTAGCAGAGTTAGCAAGTCACTGCAGTGCAAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCAGTTAACGTGCTTTCTTCACTTGTAGAACAATGGAAACCGTCGGATACAAATTCCGAAGATATCTATGGAATTGACCTTGACTTATCTTTACCACAAGCACTCAAGAAGTGGCAGGCTTATGAAGGTGCAAGTCAATTGGAGTCATCATCTTCTTCGCTTCTTCCGAGTTTGGATAACACACAAACAAGTATACCTAATCGCCCGTATGGATTTGCCGATTCTTTCACGTCGGCAGATGGTAGATGA 2856 0.4125 MKKNTNTSIIMLINPLTFFLFFSFFTLFTYSQNDDVSVMQTLKTNLNPPISLGWSDPDPCKWNHVTCSDEKRVTRIQIGRQNLQGTLPQTLQNLTQLEHLELQFNNFSGPIPSLHNLNSLQVFMAGSNSFSAIPEDFFANKSQLVTVEIDDNPFEPWEIPLSLKDALSLRNFSANNANVKGKLPDFFSDEVFSSLTLLHLAFNKLEGGLPKSFSGLNVQSLWLNGQKSDSKLSGSVDVLQNMTSLSEVWLHTNKFSGPLPSFEGLESLKVLSLRDNSFTGVVPSSLVSLKSLKVVNLTNNLFQGPMPVFGAGVEVDNIKDSNSFCLSSPGDCDPRVQVLLSVVGGMGYPSRFANDWKGNDPCADWIGITCSDGNISAVNFQKMGLSGVISPEFAKLKSLQKLILSDNNLTGSIPNELTTLPMLTKLNVANNHLFGKVPNFRSNVIVTTIGNIDIGKDTSSFAPQGSVSSNGTDASGGNGGSNGNDGKKSSSHVALIVFAVVGAVFVASLIGFLVFCLLRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGVSEAHAVPNSEMGDIQMVEAGNMVISIQVLRSVTNNFSAKNILGQGGFGTVYKGELHDGTRIAVKRMECGAIVGKGEAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHIFNWPEEGLEPLAWNRRLIIALDVARGVEYLHSLAHKSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDDSQPEDSMHLVTWFRRMYVDKDSFRKAIDPTIDINEETLASIHTVAELASHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDTNSEDIYGIDLDLSLPQALKKWQAYEGASQLESSSSSLLPSLDNTQTSIPNRPYGFADSFTSADGR* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3109 951 Gene3D Ribonuclease Inhibitor 32 332 IPR032675 -
Tpr4g3109 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Tpr4g3109 951 SMART LRR_typ_2 265 288 IPR003591 -
Tpr4g3109 951 SMART LRR_typ_2 192 215 IPR003591 -
Tpr4g3109 951 SMART LRR_typ_2 117 140 IPR003591 -
Tpr4g3109 951 SMART LRR_typ_2 396 420 IPR003591 -
Tpr4g3109 951 SUPERFAMILY L domain-like 336 443 - -
Tpr4g3109 951 MobiDBLite consensus disorder prediction 917 940 - -
Tpr4g3109 951 Pfam Protein kinase domain 600 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3109 951 Pfam Leucine rich repeat 392 433 IPR001611 GO:0005515
Tpr4g3109 951 Pfam Leucine rich repeat 261 301 IPR001611 GO:0005515
Tpr4g3109 951 MobiDBLite consensus disorder prediction 466 485 - -
Tpr4g3109 951 Gene3D Ribonuclease Inhibitor 334 458 IPR032675 -
Tpr4g3109 951 SMART serkin_6 598 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3109 951 ProSitePatterns Protein kinases ATP-binding region signature. 604 636 IPR017441 GO:0005524
Tpr4g3109 951 ProSiteProfiles Protein kinase domain profile. 598 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3109 951 SUPERFAMILY Protein kinase-like (PK-like) 573 882 IPR011009 -
Tpr4g3109 951 Gene3D Transferase(Phosphotransferase) domain 1 676 896 - -
Tpr4g3109 951 SUPERFAMILY L domain-like 38 310 - -
Tpr4g3109 951 Gene3D Phosphorylase Kinase; domain 1 559 675 - -
Tpr4g3109 951 PANTHER RECEPTOR PROTEIN KINASE TMK1 25 951 - -
Tpr4g3109 951 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Tpr4g3109 951 Pfam Leucine rich repeat N-terminal domain 336 371 IPR013210 -
Tpr4g3109 951 CDD STKc_IRAK 604 877 - -
Tpr4g3109 951 ProSiteProfiles Leucine-rich repeat profile. 398 421 IPR001611 GO:0005515
Tpr4g3109 951 MobiDBLite consensus disorder prediction 917 951 - -
Tpr4g3109 951 PANTHER OSJNBA0070M12.3 PROTEIN 25 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3109 Tpr-Chr4 36660089 36663653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3109 76 867 Receptor kinase-like Gene Family AT1G55610 29.300 5.50e-81 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tpr4g3109 Pkinase 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3109 - K00924 aprc:113846741 1473.76