Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3108 ATGGTTTTGTCATGGACAAAAGGAAGTAGGGTTTTTCGTCGTGCAAGAAAAGGAAAAGAGTTACTATCAAATTCATTGAATGATTTACAAGTTGAGATAGCAATCCCAACGCATTTTCGTTGCCCGGTAACACTAGATTTAATGAAAGATCCGGTTACACTATCAACAGGTATAACCTACGACAGAGACAGCATCGAAAAATGGATCGAATCAGGTAACAACACATGTCCCGTAACAAAAACAGAATTAACTTCCTTTGACATTGTACCAAATCATTCTCTTCGGAGAATGATTCAAGATTGGTGTGTACAACACCGTTCCTATGGTGTCGAAAGAATCCCAACTCCACGTATTCCAGTAACCCCATACGAGGTTACTGACACGTGTACTAGGATTCTGTCGGCGACGCAACAAGGGGATGAAAACAAGGTTATTGAATTGGTCAAGAAGATAAAGAGTTGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATAGTTTCAAATGGTGCTCCTCTTGTTCTTGCTAAGGTTTTTGATTCTTTCTCACGTGGTTCAATAGAGAAGAATTTTGTTGTTTTGGAAGAGATTTTGGAAGTGCTGACGTGGATGCGTCCTGTTCCTGAAGAGGGTAGATTTGTCTTTTTGGGATCATCAAACTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGATCAACAAAAAATTTCAACTAGGCAAAATGCTTCTTTGTTGCTTAAGGAAATGAATGTTGAGTCATTGGTGAAAATTGAAGGGATTATTGAATCATTGGTGAACATGGTTAAGGTTAATGTTGAGATTGGAACCGCTTCTACAAAAGCATGTTTGTCAATAATTTTTCACTTGGTTTACTCATCAAAGAGTAGAAAAGTGATTTTAGAGAGATTTATTGAATTGGGTTTGGTTTCAATTTTATTGGAGAATATTCTTGTTGATGCTGAAAAAGGGGTATGTGAGAAAGCTTTAGGAGTATTGAATTGCCTTTGTGATAGTAAAAATGGGGTGCAAATAGCAAAGTCAAATGCTTTGACTTTGCCACTTGTTATTAAGAAGCTTTTGAGGGTTTCTGAATTGAGTTCTAGCTTTGTTGTTTCAATTGTTTACAAGATTTGTGATAAAGCTGAAGAAGGTGTTTTGATTGAGGCAATTCAAGTTGGGATGTTTCAAAAACTACTTGTTTTGTTGCAAGTTGGTTGTGGTGAGAGTACAAAGGAGAAAGCTACTGAATTGTTGAAATTGTTGAATGGTTATAAAAGCAAAGCAGAATGTGTTGATTCATCATTGGATTTCATGCACCTTAAGAAGCCATTCTAA 1329 0.3664 MVLSWTKGSRVFRRARKGKELLSNSLNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWIESGNNTCPVTKTELTSFDIVPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVTPYEVTDTCTRILSATQQGDENKVIELVKKIKSWGKESERNKKCIVSNGAPLVLAKVFDSFSRGSIEKNFVVLEEILEVLTWMRPVPEEGRFVFLGSSNSLSCLVWFLNDQQKISTRQNASLLLKEMNVESLVKIEGIIESLVNMVKVNVEIGTASTKACLSIIFHLVYSSKSRKVILERFIELGLVSILLENILVDAEKGVCEKALGVLNCLCDSKNGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDKAEEGVLIEAIQVGMFQKLLVLLQVGCGESTKEKATELLKLLNGYKSKAECVDSSLDFMHLKKPF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3108 442 SUPERFAMILY RING/U-box 32 111 - -
Tpr4g3108 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Tpr4g3108 442 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 442 - -
Tpr4g3108 442 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Tpr4g3108 442 PANTHER WDSAM1 PROTEIN 9 442 IPR045185 GO:0061630
Tpr4g3108 442 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Tpr4g3108 442 Gene3D - 127 426 IPR011989 -
Tpr4g3108 442 CDD RING-Ubox_PUB 39 80 IPR045210 -
Tpr4g3108 442 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Tpr4g3108 442 SUPERFAMILY ARM repeat 132 419 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3108 Tpr-Chr4 36646626 36649277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3108 10 442 U-box Gene Family AT5G37490 44.318 5.28e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3108 - - gmx:100795913 634.795