Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3103 ATGCAATACCCACATCGTTGTTTCTTCACTACTTTGGCGGTTCTCAACAAAATCCACTCTTTCGTTTTTCTCATCGCTAAGGATGCGCAACAGGCCCTAGGGGAAGTTCACCAGCCAAGGTGGCTTGAGGATTTTTTGTGGCAAAAGTTCTCTGACTCATGTCTTTCTCATTCGAAAGAGAGGAATTTATACTGCATAAATTGCAAAGTATCTGCTTGTAAGCATTGTATGTCATCAGGATCTCATGAAGATCACCAGATACTGAGAATCTATAAGAATAATTACAGGGATGGCGTCTGCCTGGCTGCTATGCAGACATATATCGACTGCTCCCAGATCCAGTCGTTCAAATGCAACAACCTAAGGGTTCTGAATCGTAGTCCGCGTTGTGGATCAACATCGGATGATGCAACATGCAATAATGGCAGCAGAAAATCGAAAGAAGCTAGAGCATATCAGTACTGCTCCATAACTTGCATGGTTAAAGCTGCAAGGAAGTCTTCAATTCCTCCCATCGTTTCCATCCAGGCTCCTCCTCCTCAGGAATCACGGGGGGAAATTTCTGAGCCCTCTAAGCGAAAGAGGAAACGAAAAGGAACTCCACATAGAGCTCCATTGTTCTAA 624 0.4423 MQYPHRCFFTTLAVLNKIHSFVFLIAKDAQQALGEVHQPRWLEDFLWQKFSDSCLSHSKERNLYCINCKVSACKHCMSSGSHEDHQILRIYKNNYRDGVCLAAMQTYIDCSQIQSFKCNNLRVLNRSPRCGSTSDDATCNNGSRKSKEARAYQYCSITCMVKAARKSSIPPIVSIQAPPPQESRGEISEPSKRKRKRKGTPHRAPLF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3103 207 SUPERFAMILY B-box zinc-binding domain 53 90 - -
Tpr4g3103 207 ProSiteProfiles Zinc finger B-box type profile. 49 90 IPR000315 GO:0008270
Tpr4g3103 207 MobiDBLite consensus disorder prediction 170 207 - -
Tpr4g3103 207 Gene3D Classic Zinc Finger 53 92 - -
Tpr4g3103 207 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 27 207 - -
Tpr4g3103 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 27 207 - -
Tpr4g3103 207 Pfam PLATZ transcription factor 92 161 IPR006734 -
Tpr4g3103 207 Pfam B-box zinc finger 53 88 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3103 Tpr-Chr4 36548708 36552262 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Tpr4g3103 PLATZ 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3103 - - mtr:MTR_5g077740 207.994