Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3102 ATGGATTCATCATCACATGAAACTGTGATTTCTACAAAGGGAAAAGATCAAAGTTGGAATCTTTTCAATTCTCAACCACAACCCACCATGTCATTCTCGACGATCGATGTTTGCAAGAAGCGGAAACGATGGCAGAAGATTTTTAGGTTACAATCTTTCGCTGATCCTGGTTGTCCAATTGCACCTTCAGGTTCTTTCCGTGAAAATGTTCGATTGTTTCTTCAAGAAGCTGGTGAACTTGAAGATTATACGGTTATGGGAAATCCTCTTTGGTGCACTTTTCTGAATCATGAAAAGTCAAATCTTATGGTTCCTTTCTATACTCTTGAAGAACAAGTTTATAATTCTTCTCATCCTTTCTGTGATCATTGCCGTTGTGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTACCATTTCATAATTCCAATGGATAATGAGTGGCATAAGCCCTTAAATGAAGAAGCTCTTGATAATCAGAATCATCTGTTACATGGTGTGATTCACTGCAATGGTTATGGCCATTTGATATGTCTTAATGGCATTGAAGGTGGCTCCAAATTTCTCAGTGGTAGAGAAATCATGGAACTATGGGATAGAATTTGCACCAATCTTACAGCAAGGCAAATTGCAGTGGAAGATGCTTCAAGGAAAAGATCAATGGATCTTAGATTACTTCATGGAGTTGCTTATGGTCACTCTTGGTTTGGTAGGTGGGGCTATAAGTTCTGTCGTGGAAGCTTTGGTGTGACAGAAGAAAACTACTATGAAGCAATTGAAACTCTTGGTTCATTAGTTCTTGATGATATTGTAAGAGATTTGAGTAAGACAAAGTATCATAAAGATATCAAACAAATGATTCGTTTCTATAGAGATATGAGTGAAACTCGTATAGTCACAATAAGGGAGCTTCTTAGATTCATGCTTACTGTCAAGTCTCGTCATACTGTATCGAAGATAACAGTCACTTATTCTTCTTCTGACGCTGCTTCTGCTGCTGATTCACCTCCTTGTTCTACTTCAGCATGTATGTCAAGAAATTCGACCAAACATGCACTTTCAAGTAGATCAAATTCCATGAATAAGGAAAAATCAGCAAGGTATAAGAAGTTCAGCACTGCAGTGGCGACTATGGATAGTAGATGGCCAACAAGGAGACTCGAATTCGCAGCTCAAGTGATTGTTGATGCATTAAAAGAAGACAAAGCTATGAAACCAGGCTCAAGTGGCATGACAAGGCAAGATGTGAGGGATGCAGCTAGGGTTCACATTGGTGACACAGGTTTACTTGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGAAAACTATGTCGTTCGTCGTATGGTTAACCCTTCATCAAGGATCCTTGAGTATACCATTCATGAGCTTGGAAAAGAGTTCAAAGCACCTGAAGTAGAATATAGTGTAATGACACTTGTAGATAATCCTCAAGTGGAGTCATCAACACCATCATCATCATCTTCTTTATCTTTGGTGCCTGGTAATGATGTTTACAGTGATGTAGTTTATCTCTACAAGAATGTGTTACTAGGTTATCCAGATTCAGAGCCAGTTGAATTAGCAGTTCAGACAATTCTTCACTGCAGACACTTTGTGAAAGAGTGGAAATTGAGAGATGAAATGGAGCAAGTTTTGACATTTATTTGCCGTTTGAAACCGAATTTCATCGAAAATAAGTCTGATTTCAAAGGGCCATCTTGTGGTGAGATTGTAACTGTTCCACTGCATGCAACAGTTAAAGATTTGAAGCAAGCTGCTGAGGCTGCATTAAGGGACACATATTGCATAGCTGAAAGACTAATTGTAACTGATATCAAAGAATTGATGGATGCGGATGATGAAGAAGTTATTTTTGGACAGATTGAATCAGGTGTGAAGCTTTGTGTGAGGGGAATTGGAATAGATTTATACACACCATTGAAGTATCAAGGAGGTTCTGATAATTGGAAGGTGAGGTGTGAGTGTGGAGCACAGGATGATGATGGTGAGAGAATGATTGCTTGTGATATTTGTGAGGTATGGCAGCATACAAGATGTTGTGGAATAGATGATTCTGAGACAGTTCCACCATTGTTTGTTTGTTCTGGATGTTGTGATTCACTTGTACCGCCAAGGATCGAATCTAGCCGCTATGGTATGGTGGATTGTGCTGATGCTTTTCTGGTTTCAGCTGAGGCTGCTCATTTGCTTGAGTATGGTTATGGGTATTGA 2241 0.3913 MDSSSHETVISTKGKDQSWNLFNSQPQPTMSFSTIDVCKKRKRWQKIFRLQSFADPGCPIAPSGSFRENVRLFLQEAGELEDYTVMGNPLWCTFLNHEKSNLMVPFYTLEEQVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNEWHKPLNEEALDNQNHLLHGVIHCNGYGHLICLNGIEGGSKFLSGREIMELWDRICTNLTARQIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTEENYYEAIETLGSLVLDDIVRDLSKTKYHKDIKQMIRFYRDMSETRIVTIRELLRFMLTVKSRHTVSKITVTYSSSDAASAADSPPCSTSACMSRNSTKHALSSRSNSMNKEKSARYKKFSTAVATMDSRWPTRRLEFAAQVIVDALKEDKAMKPGSSGMTRQDVRDAARVHIGDTGLLDYVLKSLNNVIVENYVVRRMVNPSSRILEYTIHELGKEFKAPEVEYSVMTLVDNPQVESSTPSSSSSLSLVPGNDVYSDVVYLYKNVLLGYPDSEPVELAVQTILHCRHFVKEWKLRDEMEQVLTFICRLKPNFIENKSDFKGPSCGEIVTVPLHATVKDLKQAAEAALRDTYCIAERLIVTDIKELMDADDEEVIFGQIESGVKLCVRGIGIDLYTPLKYQGGSDNWKVRCECGAQDDDGERMIACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESSRYGMVDCADAFLVSAEAAHLLEYGYGY* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3102 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 711 IPR013083 -
Tpr4g3102 746 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 40 714 - -
Tpr4g3102 746 SMART PHD_3 662 708 IPR001965 -
Tpr4g3102 746 SUPERFAMILY FYVE/PHD zinc finger 655 714 IPR011011 -
Tpr4g3102 746 ProSitePatterns Zinc finger PHD-type signature. 663 707 IPR019786 -
Tpr4g3102 746 CDD PHD_MMD1_like 663 707 - -
Tpr4g3102 746 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 40 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3102 Tpr-Chr4 36543998 36546841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3102 37 713 PHD Transcription Factor Family AT5G22260 32.138 8.29e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3102 - - mtr:MTR_5g077750 1269.6