Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3101 ATGATCGGGAAGAAGGAGATGGAGGAAGAGGAAGAACAGAAAATCAGGAGTAATAGCAATCAAAGGACGCTTTCGAGGTCTTTATCTACAGCTTCATCTTCTGCAGATGAAAATGAGTACGAAGTTCAGGATCTTAAAGATCGATTGAAATCATCAAGAGGAAGCATGTTCAATTTGATAGAGACGGAGTTAGGGTTAAGGATCGGTTGGAGAAAGTTCAGTCGCGGAGCTCCTTTTCAAGAATCCGTTATCATTAATCCTGATAACAGGTGGTATCGAGCATGGATCAAATTCATATTATTATGGGCAGTATATTCATCTTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGTCTGCCCGAGAATCTATTTATACTGGACATCATAGGACAGATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGCATGGTCTACAAGCGTACTCCTATTGCTTTGCGGTATCTAAAATCAAACTTTGTGGTTGATCTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGGCTTGTGGACGGAGAGAGGAAGTGAGGTTTCTATTGTGGATCAGATTATATAGGGCGCAGAGAGTCGTACAATTTTTCAGAAATTTGGAGAAAGACATACGTGTCAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTTCCGGAATCTCAAGAGGGTTACACATGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAGCTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACGTCAATGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGATATGGTTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATAAACTTGGTAGGGATATCCGTGAACAAATAAAGGGCCATGTGCGCCTGCAATTTGAGAGCAGCTACACTGATGCTTCCGTCCTTAAGGACATTCCCATTTCTATTCGATCTCAGATATCTCAATCGTTGTATTTGCCATACATTGAGAAAGTTTCTCTTTTTAGAGGATGCTCTTCAGAATTTATCAATCAGATTGTTAATAGGCTCCATGAGGAGTTTTTTCTTCCAGGGGAAGTTATAATGCAACAAGGATACGCTGTAGATCAACTATATTTTGTCTGTGATGGTATGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCCGAAGAAACTGTTTCACTTTTAGAGAAACACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCGCAGCCATATACTGTCCGCGTTTGTGAACTGTGTAGGGTCCTGCGGCTCGATAAACAATCATTTTCAAATATCCTTGAAATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTATAGAGGGAAAAGAGTCTATTAAAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAACAGAACAGCTTTTGATGGTGATATGTATCAGCTAAAAAGTTTGATTCGAGCTGGAGCTGATCCCAAGAAGACAGATTATGATGGGAGATCACCTTTGCATCTGGCGGCATGCAGAGGATACGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAGTGGACACGATCGGATTGCTGCTTTACTTGTTGAAGAAGGCGCCTCTTTGAAGATAGATGATGGTGGTAGTTTTTTATGCACATCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGCATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAATACACCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTGATAAAGCTGCTGGAAGATGCAAAATCTGCTCAATTGACAGAATTTCCTTTCCCCCAAGAAATTACAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCCTTCCACCCATGGGATCCGAAAGAACAAAGAAGAAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAACTAATCAAAACAGCTGCAGAACAGACAGGAATTTCTAACGACTCTTGTATTATATCAGAAGATGCTGGTAAAATTATTTATGTCGACATGATTAAGGATGATCAGAAGCTGTATTTAGTCGATGAAACGCATTAA 2514 0.3946 MIGKKEMEEEEEQKIRSNSNQRTLSRSLSTASSSADENEYEVQDLKDRLKSSRGSMFNLIETELGLRIGWRKFSRGAPFQESVIINPDNRWYRAWIKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSNFVVDLLGCMPWDLIYKACGRREEVRFLLWIRLYRAQRVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSSFREIDLWKRYTTSMYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLGRDIREQIKGHVRLQFESSYTDASVLKDIPISIRSQISQSLYLPYIEKVSLFRGCSSEFINQIVNRLHEEFFLPGEVIMQQGYAVDQLYFVCDGMLEEVGIAEDGSEETVSLLEKHSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILEIYFYDGKKVLDNLIEGKESIKGKQLESDITFHIGKLESELALKVNRTAFDGDMYQLKSLIRAGADPKKTDYDGRSPLHLAACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGHDRIAALLVEEGASLKIDDGGSFLCTSVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVHPKKCTVFPFHPWDPKEQRRNGIVLWVPHTIEELIKTAAEQTGISNDSCIISEDAGKIIYVDMIKDDQKLYLVDETH* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3101 837 Pfam Ankyrin repeats (3 copies) 571 652 IPR002110 GO:0005515
Tpr4g3101 837 Pfam Ankyrin repeats (3 copies) 663 740 IPR002110 GO:0005515
Tpr4g3101 837 PRINTS Ankyrin repeat signature 590 605 IPR002110 GO:0005515
Tpr4g3101 837 PRINTS Ankyrin repeat signature 702 716 IPR002110 GO:0005515
Tpr4g3101 837 Gene3D - 555 652 IPR036770 -
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat region circular profile. 622 653 - -
Tpr4g3101 837 SUPERFAMILY cAMP-binding domain-like 341 530 IPR018490 -
Tpr4g3101 837 SMART cnmp_10 413 531 IPR000595 -
Tpr4g3101 837 SMART ANK_2a 589 618 IPR002110 GO:0005515
Tpr4g3101 837 SMART ANK_2a 686 715 IPR002110 GO:0005515
Tpr4g3101 837 SMART ANK_2a 719 749 IPR002110 GO:0005515
Tpr4g3101 837 SMART ANK_2a 622 651 IPR002110 GO:0005515
Tpr4g3101 837 SMART ANK_2a 653 682 IPR002110 GO:0005515
Tpr4g3101 837 PANTHER POTASSIUM CHANNEL SKOR-LIKE 33 836 - -
Tpr4g3101 837 MobiDBLite consensus disorder prediction 18 38 - -
Tpr4g3101 837 Gene3D - 653 749 IPR036770 -
Tpr4g3101 837 PANTHER POTASSIUM CHANNEL AKT1 33 836 IPR045319 GO:0005249|GO:0006813
Tpr4g3101 837 ProSiteProfiles cAMP/cGMP binding motif profile. 413 516 IPR000595 -
Tpr4g3101 837 Gene3D Helix hairpin bin 340 396 - -
Tpr4g3101 837 Gene3D Jelly Rolls 397 534 IPR014710 -
Tpr4g3101 837 MobiDBLite consensus disorder prediction 1 17 - -
Tpr4g3101 837 PRINTS EAG/ELK/ERG potassium channel family signature 128 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3101 837 PRINTS EAG/ELK/ERG potassium channel family signature 237 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3101 837 PRINTS EAG/ELK/ERG potassium channel family signature 285 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3101 837 PRINTS EAG/ELK/ERG potassium channel family signature 329 338 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3101 837 Pfam Cyclic nucleotide-binding domain 433 517 IPR000595 -
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat region circular profile. 686 718 - -
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Tpr4g3101 837 Pfam Ion transport protein 93 338 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr4g3101 837 Pfam KHA, dimerisation domain of potassium ion channel 763 832 IPR021789 -
Tpr4g3101 837 ProSiteProfiles KHA domain profile. 764 837 IPR021789 -
Tpr4g3101 837 Gene3D - 95 339 - -
Tpr4g3101 837 SUPERFAMILY Ankyrin repeat 565 741 IPR036770 -
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Tpr4g3101 837 CDD CAP_ED 413 519 IPR000595 -
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Tpr4g3101 837 ProSiteProfiles Ankyrin repeat region circular profile. 589 621 - -
Tpr4g3101 837 MobiDBLite consensus disorder prediction 1 39 - -
Tpr4g3101 837 SUPERFAMILY Voltage-gated potassium channels 87 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3101 Tpr-Chr4 36520411 36538087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3101 660 739 Ion Channels AT5G37500 33.333 5.71e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3101 K21867 - gmx:100814385 1400.57