Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3094 ATGGGTCGTGGGAGTGGAAAAGTAACCTTGAAACACATTCAAAATGAGAAAGTTCGTACATCAGCTTTCAATCAGAGAAGTAAAGGATTAACAAAAAAAGTATCAGAGTTTTCTAACAACTTTGAAGTTGAAGCTTTCTTAATTGTGTACGGTGGTGATCGTGACGGTAAACCCATGACTTGGCCACAAGACCCCAGAACACTACGATCCATGCTTACAAAATATGAGCAACAAAAGAATGAGACAACTCCAACGAAATTTGAAGCGAAAGACTATTTTGCAAATAAGAAGAATGCGGTTGAAGCTGAGATATTGAGAGTGCGCAAAAAGATCACAAAGAACAAATATCCAACCTGGGGTAGATGTTTTAACAATTTGGAAGGGGAGCAACTCAAAGGTTTCATCAACTTTGTAGATCTCAAGATTCAGTGTTGTGACGAAAGAATTAACATGTTGAAAAATATGGAACAGAGTGATCAAACTAGTTTCAGGGAAAACACTGCTCATATGCCAGATAATGTTACCTCTCCACAAGCAAGCCAACCTGATGATACTCTGAAACAACTTGTTAGTATTAATGACATGATGGATTTCACGGATGTTATAGAGTGGGATGATCCAATGCCTCAAAATAATGTTTTCTCCTCACATTCAAGTGAACTTGATGACATGCATAGCATTCCTCAAATGCAAACTATCTCTGCTCCTTTGAAGTCACTTGATAATATTAATGACATGGTGGATTTCAGCGATGTTATAGAGTGGGATGATCTAATGCCTCAAAATAATGGTTTCTCCTCACATTCAAGTGAACTTAATGTCATGGATAGCATTCCTCAAATGCAACCTATCTCTGCTCCTTTGAAGTCACTTGATAATATAAGTTTGCCTTTAACTTCATCAACAAGTCAACTTGGTGAGTTTGTGAAGTTGGATGATCTAATGGATAAATCTGATCAGGACTGGGCTAGTCAACTTGTGGATTTGGATGACTGGGCTTCTAATAAGCTAGATGATGATGATGGTATTGTGAATTGGCTAAGGCAACCTGATGTGTTTGAATGGCAAGATATTTCCTTTTCATCTGAAATTGAACAACAATGTGCAGCTTTGGATGTCTTTTCCCAATCAATATATGGATTTTAA 1146 0.3743 MGRGSGKVTLKHIQNEKVRTSAFNQRSKGLTKKVSEFSNNFEVEAFLIVYGGDRDGKPMTWPQDPRTLRSMLTKYEQQKNETTPTKFEAKDYFANKKNAVEAEILRVRKKITKNKYPTWGRCFNNLEGEQLKGFINFVDLKIQCCDERINMLKNMEQSDQTSFRENTAHMPDNVTSPQASQPDDTLKQLVSINDMMDFTDVIEWDDPMPQNNVFSSHSSELDDMHSIPQMQTISAPLKSLDNINDMVDFSDVIEWDDLMPQNNGFSSHSSELNVMDSIPQMQPISAPLKSLDNISLPLTSSTSQLGEFVKLDDLMDKSDQDWASQLVDLDDWASNKLDDDDGIVNWLRQPDVFEWQDISFSSEIEQQCAALDVFSQSIYGF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3094 381 PANTHER PROTEIN, PUTATIVE-RELATED 5 252 - -
Tpr4g3094 381 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 61 IPR002100 GO:0003677|GO:0046983
Tpr4g3094 381 Gene3D - 15 99 IPR036879 GO:0003677|GO:0046983
Tpr4g3094 381 ProSiteProfiles MADS-box domain profile. 3 51 IPR002100 GO:0003677|GO:0046983
Tpr4g3094 381 PANTHER MADS BOX PROTEIN 5 252 - -
Tpr4g3094 381 SUPERFAMILY SRF-like 5 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3094 Tpr-Chr4 36389553 36390698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3094 1 143 Type I MADS-box Gene Family AT5G55690 31.757 3.30e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g3094 SRF-TF 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3094 - - mtr:MTR_2g049630 256.529