Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3092 ATGGGTCGTGGGAGTGGAAAAGTAACCTTGAAACACATTCAAGATGAGAAAGTTCGTAATTTAGCTTTCAATCAGAGAAGTAAAGGATTAACAAAAAAAGTATCTGAGTTTTCTAACAACTTTGAAGTTGAAGCTTTCTTAATTGTGTACGATGGTGATGGTGACGGTAAACCCATGACTTGGCCACAAGACCCCAGAACACTACGATCCATGCTTACAAAATATGAGCAACAAAAGAATGAGACAACTCCAACGAAATTTGAAGCGAAGGACTATTTTGCGAATAAGAAGAACGCGGTTGAAGCTGAGATATTGAGAGTGCGCAAAAAGATCACAAAGAACAAATATCCAACTTGGGGTAGATGTTTTAACAATTTGGAAGGGGAGCAACTCAAAGGTTTCATCAACTTTGTAGATGTCAAGATTCAGTGTTGTAATGAAAGAATTAACATGTTGAAAAATATGGAACAGAGTGATCAAACTAGTTTCAGGGAAAACACTGCTCATATGCCAGATAATGTTACCTCTCCACAAGCAAGCCAACCTGATGATACTCTGAAACAGCTTGTTAGTATTAATGACATGATGGATTTCACGGATGTTATAGAGTGGGATGATCCGATGCCTCAAAATAATGTTTTCTCCTCACATTCAAGTGAACTTAATGTCATGCATAGCATTCCTCAAATGCAACCTATCTCTGCTCCTTTGAAGTCAGTTGATAATATAAGTTTGCCTTCAACTTCATCAACAAATCAACTTGGTGAATTTGTGAAGTTAGATGATCTAATGGATAAATCTGATCAGGACTGGGCTAGTCAACTTGTGGATTTGGATGACTGGGCTGCTAATAAGCTAGATGATGATGATGTTGGTGATGGTATTGTGAATTGGTTAAGGCAACCTGATGTGTTCGAATGGCAAGATAATTCCTTTTCATCTGAAATTGAACAACAATGTGCAGCTTTGGATGTCTTTTCCCAATCAATATATGGATTTTAA 1002 0.3743 MGRGSGKVTLKHIQDEKVRNLAFNQRSKGLTKKVSEFSNNFEVEAFLIVYDGDGDGKPMTWPQDPRTLRSMLTKYEQQKNETTPTKFEAKDYFANKKNAVEAEILRVRKKITKNKYPTWGRCFNNLEGEQLKGFINFVDVKIQCCNERINMLKNMEQSDQTSFRENTAHMPDNVTSPQASQPDDTLKQLVSINDMMDFTDVIEWDDPMPQNNVFSSHSSELNVMHSIPQMQPISAPLKSVDNISLPSTSSTNQLGEFVKLDDLMDKSDQDWASQLVDLDDWAANKLDDDDVGDGIVNWLRQPDVFEWQDNSFSSEIEQQCAALDVFSQSIYGF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3092 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 61 IPR002100 GO:0003677|GO:0046983
Tpr4g3092 333 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Tpr4g3092 333 PANTHER PROTEIN, PUTATIVE-RELATED 5 236 - -
Tpr4g3092 333 PANTHER MADS BOX PROTEIN 5 236 - -
Tpr4g3092 333 SUPERFAMILY SRF-like 5 82 IPR036879 GO:0003677|GO:0046983
Tpr4g3092 333 Gene3D - 15 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3092 Tpr-Chr4 36372108 36373109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3092 1 143 Type I MADS-box Gene Family AT5G55690 29.730 3.59e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g3092 SRF-TF 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3092 - - mtr:MTR_2g049630 252.292