Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3084 ATGAAACTGAAAGAAACTGTTCTGTTTTTTCTCATAGCGTTTTTAATCGCCATTGTTTCCGGTGCCGATCTAGCTTCTGATCGAGAAGTTCTACTAAAACTACGGGCCTCTGTCGGAGGACGAACACTCTTCTGGAACACGACGGAGACAGAACCGTGTTTATGGACCGGCGTTACCTGCGATAACAAAAGAGTTACAGCTTTAAGATTGCCGGCGATGGGTCTCACCGGTGATCTTCCTTTAGGTTTAGGAAATCTCACTGAATTACAAACACTTTCTCTCCGGTTCAATGCGTTAACCGGAGAAATTCCTTCTGATTTTGGGAATTTGGTTAATCTAAGAAATCTTTATCTTCATGGTAATTTTTTCTCCGGTGAGGTTCCTGAATTTTTGTTTAGTTTGCAGAAATTGGTTCGGTTGAATTTAGGTAAAAATAATTTCAGCGGTGAAGTTTCTGAGAAATTCAACAAACTAACTCGTTTGGATACACTCTTTTTGGAGCAAAATCGGTTCACTGGTTCTGTTCCTGATCTTAATGTTCCTCCATTACATCAATTCAATGTGTCGTTTAACAATTTGACCGGTTCGATTCCGAAGAGGTTTTCGCATTTAGATATAAGTGCTTTTTCTGGTAATTCACTTTGTGGAAATCCTCTTCAAGTAACTTGTCCTGGAAACAGTAACAAAAAAGGCTTATCTGGTGGAGCTATTGCTGGAATTGTGATTGGTTGTGTTTTTGGTTTTTTGTTGATTCTGATTCTTTTGGTATTGTGTTGTAGAAAAAGAAGAAAAAGTGATTCTGATAATGTAGCACGTGCCAAGAGTGTTGAAGGTGATGTGTCACGTGAGAAAACAAGTAGAGATGTTGAGAGTGGTGGTGGTGGTGCTGATGGAGGGAGTTATTCAGGTTTGGCTTCGGCTTCGACAACAGCTTCGGCTTCTGGTTTATCATTAGAGAAGAGTTTGGTGTTTATTGGGAATGTGACTAGTAAATTTAGTTTAGATGATTTGTTAAGAGCTTCTGCTGAAGTTTTGGGAAAAGGGACATTTGGAACAACTTATAAGGCAACATTGGAGCATGGAATGAGTGTAGCTGTGAAGAGGTTAAAGGATGTTACATCAAGTGAAAGAGAATTCAGAGAGAAAATTGAAGAAGTTGGAAAATTTGTTCATGAGAATTTGGTCCCACCTAGGGGTTATTATTTTAGTAAAGATGAAAAACTTGTTGTCTATGATTATATGCCAATGGGAAGCTTATCTGCACTCTTGCATGCAAATAATGGTGCTGGAAGGACTCCACTGAATTGGGAAACTAGGTCAACCATTGCCCTTGGTGCTGCCCAAGGGATTGCATACCTACACTCACAAGGTCCAACATCTTCTCATGGAAACATCAAGTCATCAAACATCCTTCTCACCAAATCATACGAGCCTCGTGTCTCTGACTTCGGCCTTGCGTATCTCGCTCTTCCGACTGCTACGCCCAACCGAATTTCAGGCTACCGTGCACCAGAGGTCACCGATGCGCGCAAAGTATCCCAAAAAGCAGACGTCTACAGCTTCGGTATAATGCTTTTGGAGCTACTTACAGGGAAGGCGCCTACTCATTCTTCGTTGAATGAAGAAGGAGTAGACCTACCAAGATGGGTTCAATCCATCGTTCAAGACGAGTGGAACACCGAAGTTTTCGACATGGAGCTTCTCAGGTACCAAAGTGTCGAGGAGGAAATGGTGAACCTATTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCCGATAAGAGACCTTCGATGGATGTGGTTGCTAGCAAGATTGAGAAAATTTGTTCTCCTAGTTTAGAGAAAGAGGGAGATAAGATTCGTTATGATTGA 1872 0.414 MKLKETVLFFLIAFLIAIVSGADLASDREVLLKLRASVGGRTLFWNTTETEPCLWTGVTCDNKRVTALRLPAMGLTGDLPLGLGNLTELQTLSLRFNALTGEIPSDFGNLVNLRNLYLHGNFFSGEVPEFLFSLQKLVRLNLGKNNFSGEVSEKFNKLTRLDTLFLEQNRFTGSVPDLNVPPLHQFNVSFNNLTGSIPKRFSHLDISAFSGNSLCGNPLQVTCPGNSNKKGLSGGAIAGIVIGCVFGFLLILILLVLCCRKRRKSDSDNVARAKSVEGDVSREKTSRDVESGGGGADGGSYSGLASASTTASASGLSLEKSLVFIGNVTSKFSLDDLLRASAEVLGKGTFGTTYKATLEHGMSVAVKRLKDVTSSEREFREKIEEVGKFVHENLVPPRGYYFSKDEKLVVYDYMPMGSLSALLHANNGAGRTPLNWETRSTIALGAAQGIAYLHSQGPTSSHGNIKSSNILLTKSYEPRVSDFGLAYLALPTATPNRISGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSIVQDEWNTEVFDMELLRYQSVEEEMVNLLQLALECTAQYPDKRPSMDVVASKIEKICSPSLEKEGDKIRYD* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3084 623 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Tpr4g3084 623 SUPERFAMILY L domain-like 45 207 - -
Tpr4g3084 623 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Tpr4g3084 623 CDD STKc_IRAK 345 608 - -
Tpr4g3084 623 Gene3D Transferase(Phosphotransferase) domain 1 414 620 - -
Tpr4g3084 623 PANTHER INACTIVE RECEPTOR KINASE-RELATED 6 614 - -
Tpr4g3084 623 Pfam Protein tyrosine and serine/threonine kinase 343 604 IPR001245 GO:0004672|GO:0006468
Tpr4g3084 623 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Tpr4g3084 623 ProSiteProfiles Protein kinase domain profile. 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3084 623 Gene3D Ribonuclease Inhibitor 181 226 IPR032675 -
Tpr4g3084 623 SUPERFAMILY Protein kinase-like (PK-like) 342 603 IPR011009 -
Tpr4g3084 623 Gene3D Phosphorylase Kinase; domain 1 305 413 - -
Tpr4g3084 623 PANTHER OS05G0588300 PROTEIN 6 614 - -
Tpr4g3084 623 MobiDBLite consensus disorder prediction 270 290 - -
Tpr4g3084 623 MobiDBLite consensus disorder prediction 270 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3084 Tpr-Chr4 36275062 36278205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3084 23 608 Receptor kinase-like Gene Family AT1G48480 56.683 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tpr4g3084 PK_Tyr_Ser-Thr 2.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3084 - - aprc:113846223 881.322