Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3082 ATGGGAAGACAACCTTGTTGTGATAAAGTAGGGTTGAAAAAAGGTCCATGGACTGCAGAGGAAGACAAGAGGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGGCTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTACTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAAAAAATGGTGATTGATCTTCATGCTCAACTTGGAAACAGATGGTCTAAAATTGCTTCTCATCTACCAGGAAGAACGGATAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTCTAAGTCACAAACCACTAAGTCACAAACCACTAGTACCCACTAATGCAACTAATAATCAAACCCAAAATCAACCAATAGAAGAACAACAGCTACAACCAATACAAAAAGAACAACAAAACCAACAACAACCTTTGACAATTAACATTAATGATACCAAATTTGAATCTAAAATTGAGGACATTGAGAAGCAAGAGACTTCAATTGAGTCATCAACCATCATTGAAGTCAAAGAAAAAGATGATATTACAATAATACCCTCATTTGACACAATGGAGCTAATGGATGGATTTTGTATTGATGAAGTTCCAATGATAGAGCCTAATGAGATTATAGTGTCTAATACCTCTTCATCCACTTCTTCATCATCTTCATCAAATTCAACTAATTTCCTTGAAGATCTTCATGATCTCCTTGATTTTGAATGGACTAATAATAATAACAAGGAAGAGGACAATGCCAACAATATGGCATTTTGGGATGATGACTTTATTAGTAGCTTGAATTTGCTAATTAATGATGATGATTATGGTGTTAATAATGGTAAAAGAAATCAAGAATTTGATGCTCATGCTCCTCTTAGCAACAACTCAAGAATGGTCACGGATTCAGAATCTTGGGCATATGATTTGTTTTGA 1005 0.3463 MGRQPCCDKVGLKKGPWTAEEDKRLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLSHKPLSHKPLVPTNATNNQTQNQPIEEQQLQPIQKEQQNQQQPLTININDTKFESKIEDIEKQETSIESSTIIEVKEKDDITIIPSFDTMELMDGFCIDEVPMIEPNEIIVSNTSSSTSSSSSSNSTNFLEDLHDLLDFEWTNNNNKEEDNANNMAFWDDDFISSLNLLINDDDYGVNNGKRNQEFDAHAPLSNNSRMVTDSESWAYDLF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3082 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr4g3082 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr4g3082 334 Gene3D - 71 116 - -
Tpr4g3082 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr4g3082 334 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tpr4g3082 334 CDD SANT 16 61 IPR001005 -
Tpr4g3082 334 PANTHER MYB TRANSCRIPTION FACTOR 1 282 - -
Tpr4g3082 334 SMART sant 66 114 IPR001005 -
Tpr4g3082 334 SMART sant 13 63 IPR001005 -
Tpr4g3082 334 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 282 - -
Tpr4g3082 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr4g3082 334 Gene3D - 11 67 - -
Tpr4g3082 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr4g3082 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr4g3082 334 CDD SANT 74 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3082 Tpr-Chr4 36234788 36238031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3082 1 334 MYB Transcription Factor Family AT5G16600 45.220 1.41e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3082 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3082 K09422 - gmx:100803624 399.438