Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3069 ATGCAGATGGCACCTGTTTCATTGCCTCCAGGTTTCAGGTTTCACCCTACCGATGAAGAACTTGTAGCTTATTATCTAAATAAGAAGATCAATGGCCATAAGATTGATTTAGAGATCATAGCTGAAGTTGATCTCTATAAGTGTGAGCCGTGGGATTTGCCAGGAAAATCATTATTACCGGGAAATGATATGGAGTGGTATTTCTTTAGCCCTCGTGATAGAAAGTACCCAAATGGATCAAGAACGAACCGTGCAACCAAATCTGGATATTGGAAGGCAACGGGGAAAGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTGGGGATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGATCTCGTACAAATTGGGTTATGCACGAATATCGTCTAGATGAGAGGGAATGTGAAACCACTCCAAGCTTACAGGATGCGTATGCTCTTTGTCGTGTGATCAAGAAGAATACAGTGATTGTGCCAAAAGTTGGAGGTCAATATAGTAATCTTACAAGCCATGCGAAACAGATTACAAGCAACCAATCACCAAGCGTGGAAGTATACTCTGAAGGAAGGGGTGAAAGTTCAAATTATTTGATGCAAATGAGTGCTTGTTCACCTCACAATATGGGGGGTAGTGATCATGGAAATTGGTCACAATTCTCATATGATCAAGGGCTTCCAACTTCATTTAATAATTATGGAACCATAACATACCCTCCCTCCAAGATGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTGCCTCCATTAGAGGTGGAGGACTTTCCACAAGGAAGCAAAACTAAAAAAGATATCTTGGAGGAAATTCTTTCACTTAATCATGCTTCTCAGGAATTGATGAATCACTCAAGTTATTCACAAGCATTTGGTGACAATGAAAATTATGCTCCTTATGAAGATGAGTTTACTTTCATGGTAGGCACAAACTACAATCACATAAATGATATGAGCTCCATGAGATATGTTGACAAATCTTGGGAAGATTTGAGCACAGGATCCATAGAGATAGGTGGTCTAGAGGATCAAGAGTTAAAGTCAAGGAGGATGGTAGAGAATTTGAGATGGATTGGAATGCCAAGGGAAGATTTGGAAAAGATGGAACAAAAGATTGTCCCAATCGAGGATATTTCATGTTTCCAAACTTTAAGGGAACAAAATGGCATGCAAGAATATGAGCAAAACAATGGCAATTACCTCGAGCAAAATGACACTTATGTCAATGAATTCTCATTAGGCTTCATTAATGATGGTGACCCTAATGAAATTTTTATAGAAGATGGTAACATGGATGGTTACTCAAATTCTCCAAGCTTTGAGGTCATTGAAGAAATAAAGGTTAGTCATGGAAGAATGTTGGTTTCAACTCAACAAGTAGCCATGACATTGTTTCACCAAGTTGTTCCTTCACAAACACTCCAAGTTCAACTCAATCCAAACCCTATAGAGAATGTAGAGGAAGTGATGATGATAATGGAGAATCAAGGGTCTTTCTTTAGGAAGTTCAAGGAAATAGCAAGTTTGGTTGTATTTGTATTTTCACTTCTTTTGATGCATTGTGTTTATTTGGAGGAAGAAGTGGAAATATGCAAAACAAACCCAAATATTGTGAAAGAGAAAATAATGAGAGAATCGTATGAGAGAATCAAATGGAATGAGTCAAAAGAGGTTTGGTTTGTTGGTTTTAAAAGTGAGGAGAAAGGATTAAGTGTGGTCTTGAAGAAAATAGGCATTTTCCTCACCATATCTTTGGCTCTTTGTACCTTGTGGGCTAGCCATAGTTAA 1821 0.3861 MQMAPVSLPPGFRFHPTDEELVAYYLNKKINGHKIDLEIIAEVDLYKCEPWDLPGKSLLPGNDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETTPSLQDAYALCRVIKKNTVIVPKVGGQYSNLTSHAKQITSNQSPSVEVYSEGRGESSNYLMQMSACSPHNMGGSDHGNWSQFSYDQGLPTSFNNYGTITYPPSKMDIALECARMQHRLPPLEVEDFPQGSKTKKDILEEILSLNHASQELMNHSSYSQAFGDNENYAPYEDEFTFMVGTNYNHINDMSSMRYVDKSWEDLSTGSIEIGGLEDQELKSRRMVENLRWIGMPREDLEKMEQKIVPIEDISCFQTLREQNGMQEYEQNNGNYLEQNDTYVNEFSLGFINDGDPNEIFIEDGNMDGYSNSPSFEVIEEIKVSHGRMLVSTQQVAMTLFHQVVPSQTLQVQLNPNPIENVEEVMMIMENQGSFFRKFKEIASLVVFVFSLLLMHCVYLEEEVEICKTNPNIVKEKIMRESYERIKWNESKEVWFVGFKSEEKGLSVVLKKIGIFLTISLALCTLWASHS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3069 606 Coils Coil 401 421 - -
Tpr4g3069 606 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Tpr4g3069 606 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Tpr4g3069 606 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 3 364 - -
Tpr4g3069 606 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Tpr4g3069 606 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 364 - -
Tpr4g3069 606 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3069 Tpr-Chr4 36063466 36069202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3069 3 601 NAC Transcription Factor Family AT1G65910 41.176 2.93e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr4g3069 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3069 - - gmx:100809019 801.971