Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3066 ATGGAGCCTGTTGATTCCCCAAGAGATATTACTAAAAGAAGCTCTGAACCTCTGATAATTTCCAACTCTACATTGCTCGATTGTTGCATGTGTTTTCAACCCTTAAGTATTCCGGTCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTCCTAAACTTAGGAACAAATGTCCGAAGTGCTCACTGCCCATTTGCTCAAAACATTGTAAAGCCGTTGAGAATCTATTGCTATCTATCGAAATGTCATGTCCAAATACAAAATATGGTTGCGGGGAGAAAATAAGTTACCTTGGAAATAGAAAGCATGAAGAAGAATGCATCCATGAACCATGTTACTGCCCCCTTTCTGGTTGTGACTTTGTTGCATCATCAAAAGTGTTGTCCAACCATTTCAGCCATAAACATAGGGATTCTCAAATTAATTTTTCTTATGACGACTCCTTTGTTGTCCCCTTGAAGTCAAATGATGAAACAATTGTTCTTCGAGCGAAAGAAGACGGCAAACTATTTATTCTCAATGATAGTACTATGAATTTGGGAATTGCAATCAACATTTGTTGCATTGGGCCTAAGTCGTTTGAGTTTGATCATCATTATGATATATTGGCTAGGTCTCACAAATCTACACTGAAATTACAGTCAGTTGCGACGAATGTCCAACGGTTTACGTTAGGAACTCTTTCATTAGAGTTCCTTATGATTCCAATTGATTCTTCTAAATCTCTCAAGCTAGATGTTTGCATAAAGTCCCCCATAAAGCCCCGCATGATGCAAATATTCATCAAGACCTTGACGACAATCACCCTAAACGTTAAGAGTTCAGACACGATACTTGATGTGAAGTTGATGATTCTTGACGCAGTAGACATCCCAGTGCATCATCAACTACGTCTACTCTTTGCTGGTAGGCTACTAGATGACAGCCTAACCCTTGCCAATTGTAACATTCAAAATGAGTCAATCCTCCTTTGCTGGTAG 987 0.3911 MEPVDSPRDITKRSSEPLIISNSTLLDCCMCFQPLSIPVFQCDNGHIVCSTCCPKLRNKCPKCSLPICSKHCKAVENLLLSIEMSCPNTKYGCGEKISYLGNRKHEEECIHEPCYCPLSGCDFVASSKVLSNHFSHKHRDSQINFSYDDSFVVPLKSNDETIVLRAKEDGKLFILNDSTMNLGIAINICCIGPKSFEFDHHYDILARSHKSTLKLQSVATNVQRFTLGTLSLEFLMIPIDSSKSLKLDVCIKSPIKPRMMQIFIKTLTTITLNVKSSDTILDVKLMILDAVDIPVHHQLRLLFAGRLLDDSLTLANCNIQNESILLCW* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3066 328 SUPERFAMILY Ubiquitin-like 248 326 IPR029071 -
Tpr4g3066 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 253 - -
Tpr4g3066 328 SUPERFAMILY TRAF domain-like 82 251 - -
Tpr4g3066 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 253 IPR044286 -
Tpr4g3066 328 Pfam Ubiquitin family 262 326 IPR000626 GO:0005515
Tpr4g3066 328 Gene3D - 260 328 - -
Tpr4g3066 328 SMART ubq_7 260 327 IPR000626 GO:0005515
Tpr4g3066 328 Pfam Seven in absentia protein family 74 150 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr4g3066 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 134 IPR013083 -
Tpr4g3066 328 ProSiteProfiles Ubiquitin domain profile. 260 325 IPR000626 GO:0005515
Tpr4g3066 328 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3066 Tpr-Chr4 35997059 36005225 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3066 25 223 C3H Transcription Factor Family AT2G41980 25.359 1.25e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3066 K04506 - gmx:100797881 247.669