Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3064 ATGCAAGACCAAAAACCAACACAACAAGCCGTTAGAGTCTACAATTTCTCTTCAAAAACTGCAATGGAGCCTGTTCATTTGAATCATTTCCAAAGACATTGCTCTGTTCCTCTGACGATTTCCGACCATAGATTTCTCGATTGTTGCGTTTGTTTTCAACCCTTAACTATTCCCCTCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACTTGTTGTCCTAAACAAAAGAACAAGTGTCACAAGTGCTCCTTGAGCATTAGCTCAGAACATTGTAAAGCCATTGAGAAACTATTGTTATCTGTCACAATGCCATGTCCGAATGCAAAACATGGTTGCAAGGACATAATAAGATACATTTATAGGAACCATGAAGAACAATGCATCCATGGACCATGTTATTGCCCCCAGTTAGATTGTGACTTTGTTGCATCATCAGAAGTGTTGTCCAACCATTTCAGTGATAAACACAAGAATTCTCAAATCAAATTTTCTTATGGTCACAACTTCGTTGTCTCCATGAAGTCTAATGAGGAAACCATTGTTCTTCAAGAGGAAAATGATGGAAAACTATTTATTCTCAATAATAGCACTATGATTTTGGGAAATGCAGTCAATATTTGTTGCATTCGTCCTAGCTCTTTTGTATCCGAGTATAGTTATGGTATGTTGGCTTGGTCTCCGAAATGCGAATTGAAATTACAGTCTTTTGCAAAGAATGTCCCGCGGTTTACTTTACCAACTCTTTCATCAGAGTTCCTTGCTATTCCATTTGGTTCTTCTGAATTTCTCAAGCTAGAAATTTGCATAAACCCCCCGATCACGATGCAAATATTCATAAAGATGATGGACCACAGGTTGTTTCCCCTAGAGGTTAAGAGTTCAAACACAGTAGGCGATGTGAAGCAGAAGATTTTTGAGAAGGTAGGGATCCCATATAACGATCAACGCCTGATCTTTTTGTTTAAGCAACTAGAATACAGTCATGACGGTCAGACCCTTGCCGATCACAACACCAAAGAGAACTCAACCATCCACCTTGTTCCCCGCTTGATTGGGGACTAG 1065 0.3925 MQDQKPTQQAVRVYNFSSKTAMEPVHLNHFQRHCSVPLTISDHRFLDCCVCFQPLTIPLFQCDNGHIVCSTCCPKQKNKCHKCSLSISSEHCKAIEKLLLSVTMPCPNAKHGCKDIIRYIYRNHEEQCIHGPCYCPQLDCDFVASSEVLSNHFSDKHKNSQIKFSYGHNFVVSMKSNEETIVLQEENDGKLFILNNSTMILGNAVNICCIRPSSFVSEYSYGMLAWSPKCELKLQSFAKNVPRFTLPTLSSEFLAIPFGSSEFLKLEICINPPITMQIFIKMMDHRLFPLEVKSSNTVGDVKQKIFEKVGIPYNDQRLIFLFKQLEYSHDGQTLADHNTKENSTIHLVPRLIGD* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3064 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 272 IPR044286 -
Tpr4g3064 354 SUPERFAMILY TRAF domain-like 102 270 - -
Tpr4g3064 354 Pfam Ubiquitin family 278 350 IPR000626 GO:0005515
Tpr4g3064 354 Gene3D - 272 354 - -
Tpr4g3064 354 SMART ubq_7 276 350 IPR000626 GO:0005515
Tpr4g3064 354 Pfam Seven in absentia protein family 93 174 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr4g3064 354 PRINTS Ubiquitin signature 286 306 IPR019956 -
Tpr4g3064 354 PRINTS Ubiquitin signature 307 327 IPR019956 -
Tpr4g3064 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 30 272 - -
Tpr4g3064 354 SUPERFAMILY Ubiquitin-like 267 353 IPR029071 -
Tpr4g3064 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 153 IPR013083 -
Tpr4g3064 354 ProSiteProfiles Ubiquitin domain profile. 276 354 IPR000626 GO:0005515
Tpr4g3064 354 ProSiteProfiles Zinc finger SIAH-type profile. 101 158 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3064 Tpr-Chr4 35958982 35961787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3064 276 353 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 55.128 1.61e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3064 K04506 - gmx:100778869 224.557