Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3060 ATGATGATTTCCAACCCAAACGCATTTGATTGTTGCATTTGTTTTCAACCCTTAACTATTCCGGTTTTTCATTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTCCTAATCTTGGGAACAAGTGTGACAAGTGCTCAAAACGCATTAGCTTAAAACGTTGTAGAGCCTTTGACAATCTATTGCAATATATCAAAATGCCATGTCCGAATGAAAAATATGGTTGCAAGGAGACAATAAGTTACAGTAAGACGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGCCCCCTTTCTGGTTGTGACTTTGTTGCCTCATCTGAAGTTTTATTCGACCATTTCAACCATAAACATGGGGATTCTCGAATCCACTTTTCATATGGTTCCTCCTTTGTTGTCTCCTTGAAGAGTAATGATGAAGTTATTGTTCTTCAAGAGCATACTAATGGAAAATTGTTTGTTCTTAATAATAGTGAAGTGCATTTAGGAAATGCAGTCAATATTAGCTGCATTGGGCCTAACTCTTCCAAGTCAAGGTATAGTTATGATATATCGGCTACGTCCCAAATAGGTTGTCTGAAGTTACAATATGTTACGAAGAATATCCAACAAAGTACTTTAGCAACTCATTCATCTGAGTTCCTTTTGATCCCATTTGGTTATTTTGAACCTCTCAAGCTAGAAATTTGCATAACTCCCAAGATACAAATTTTCGTAAGGAGAGGGAATGGAAAGATGACCCTCCTCAAGGTGGTGATTTCAGACAAAATAGCCGATTTGAAGGAAAAGTATATGAATGTGGAAGGGATCCCAGTGAACCAGCAACGTTTGATGTTTGGCAGGAAGCAACTAGATGATGACAACTGCACCATTGCCGATTACAACATCCAAGAGAACTCAATCATCTACTTGACCTGTCCAGCTTCTTGA 939 0.3834 MMISNPNAFDCCICFQPLTIPVFHCDNGHIVCSTCCPNLGNKCDKCSKRISLKRCRAFDNLLQYIKMPCPNEKYGCKETISYSKTRKHEEECIYVPCYCPLSGCDFVASSEVLFDHFNHKHGDSRIHFSYGSSFVVSLKSNDEVIVLQEHTNGKLFVLNNSEVHLGNAVNISCIGPNSSKSRYSYDISATSQIGCLKLQYVTKNIQQSTLATHSSEFLLIPFGYFEPLKLEICITPKIQIFVRRGNGKMTLLKVVISDKIADLKEKYMNVEGIPVNQQRLMFGRKQLDDDNCTIADYNIQENSIIYLTCPAS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3060 312 Pfam Ubiquitin family 240 308 IPR000626 GO:0005515
Tpr4g3060 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 238 - -
Tpr4g3060 312 ProSiteProfiles Ubiquitin domain profile. 238 307 IPR000626 GO:0005515
Tpr4g3060 312 SMART ubq_7 238 310 IPR000626 GO:0005515
Tpr4g3060 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 117 IPR013083 -
Tpr4g3060 312 ProSiteProfiles Zinc finger SIAH-type profile. 64 122 IPR013010 GO:0008270
Tpr4g3060 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 238 IPR044286 -
Tpr4g3060 312 Pfam Seven in absentia protein family 54 217 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr4g3060 312 PRINTS Ubiquitin signature 248 268 IPR019956 -
Tpr4g3060 312 PRINTS Ubiquitin signature 269 289 IPR019956 -
Tpr4g3060 312 SUPERFAMILY Ubiquitin-like 226 308 IPR029071 -
Tpr4g3060 312 SUPERFAMILY TRAF domain-like 65 234 - -
Tpr4g3060 312 Gene3D - 234 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3060 Tpr-Chr4 35907756 35910203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3060 9 221 C3H Transcription Factor Family AT2G41980 23.077 4.57e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3060 K04506 - gmx:100797881 254.218