Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3036 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAAGGACATGAAGGAGTAGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACTACTAACAGAGAAATTGATGGCCAAATACCAAATTATCCGAGTTTGCCGCCTCAGTTGATATGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTGACAGCGAGTGATACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCACAAGAACTAATTGCTAGGGATCTCCACGACGTCGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATCCGTCGAGCCAGTCGGCCACAAACTGTTATGCCATCATCAGTTCTTTCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCAGCCCATGCTGCAGCAACGAATAGCTGTTTTACAGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAATATATAAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGCTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAATTCTCATTGGAGATCTGTTAAGGTCGGATGGGATGAATCAACAGCTGGGGAGAGACAGCCTCGGGTATCGTTATGGGAAATCGAGCCTTTAACAACATTTCCAATGTATCCATCACTATTTCCTCTTAGATTGAAACGACCATGGCATCCCGGCACTTCTTCTTTTCTTGATGGCAGAGACGAAGCAACAAATGGACTAATGTGGCTGCGAGGCGGTCCCGGAGACCAAGGTCTTAATTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCAGAGAATGGATCCAGCTTTACTTGGAAACGATCATAACCAACAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAATCAAGGGAATGTGGATCTTTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAATCTCAGTCCTTTGCAACTTCAGCAACAGCAAGCAATTCAACAATCTGTATCGACTAATATCCTTCAACCACAAGGCCAAGTATTGGCACACAACAATCGAGAAAACCAAGCACAGCAACCGCAACACACTTATCAAGATACACTCTTAATTCAAGGTGATCCACTCCATCAGAAGCAACACCACTCTAGTTTACCTACACCGTCATATTCAAAACATGATTTCTTAGATTCAGGCATGAAGTTTACTGCTTCAGCTTCGCCTAGTCAAAACATGCTTGGTTCGCTTTGTTCTGAAGGGAGTGGAAATCTATTGAATTTATCAAGAAGCGGTCACTCTATGCTGAATGAACAGTTACCTCAACAATCATGGGACTCGAAATATTCACCTTCACAGGTCGATGGCATTGGAAACTCAATGTCGCACGTGCAGTATTCCGGGAGAGATACAGCAATCGTACCACCGCATTGCAACTCAGATTCCCATAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCAGCTGATGTCGATGCATCGACAATGCCATTAGGGGAGTCTGGTTTCCAGCGTTCTCCATATCCTTGCATGCAGGATTCATCAGAGTTGTTGCAAAGTGTGGAGCAGATTGATGCTCAAAACCAGATTCCAATATTTGTGAAGGTATACAAATCAGGTTCGGTAGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCACGAGCTGCGGGAGGAGTTAGCTCAGATGTATGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCTCCTGAAGATATTCAAAAAATGGGAGAACAAGCTATAGAATCCGTTGGTCCAAGTCCTGGACAAAGGCCGAATAACACTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTCGATTACTGA 2502 0.4444 MKLSTSGMSQQGHEGVEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEATNGLMWLRGGPGDQGLNSMNFQGAGLLPWMQQRMDPALLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYLQQSGNLSPLQLQQQQAIQQSVSTNILQPQGQVLAHNNRENQAQQPQHTYQDTLLIQGDPLHQKQHHSSLPTPSYSKHDFLDSGMKFTASASPSQNMLGSLCSEGSGNLLNLSRSGHSMLNEQLPQQSWDSKYSPSQVDGIGNSMSHVQYSGRDTAIVPPHCNSDSHNSVLFGVNIDSSGLLLPTTVPRYTTASADVDASTMPLGESGFQRSPYPCMQDSSELLQSVEQIDAQNQIPIFVKVYKSGSVGRSLDISRFSSYHELREELAQMYGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAIESVGPSPGQRPNNTGAESHDIVSGLPSLGSLDY* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3036 833 ProSiteProfiles PB1 domain profile. 707 791 IPR000270 GO:0005515
Tpr4g3036 833 Gene3D - 703 796 - -
Tpr4g3036 833 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 815 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g3036 833 SUPERFAMILY CAD & PB1 domains 707 781 - -
Tpr4g3036 833 Gene3D - 126 229 IPR015300 -
Tpr4g3036 833 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Tpr4g3036 833 Pfam AUX/IAA family 701 791 IPR033389 -
Tpr4g3036 833 MobiDBLite consensus disorder prediction 805 820 - -
Tpr4g3036 833 MobiDBLite consensus disorder prediction 802 823 - -
Tpr4g3036 833 CDD B3_DNA 127 228 IPR003340 GO:0003677
Tpr4g3036 833 PANTHER AUXIN RESPONSE FACTOR 1 815 - -
Tpr4g3036 833 Gene3D - 292 364 - -
Tpr4g3036 833 SMART B3_2 128 230 IPR003340 GO:0003677
Tpr4g3036 833 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Tpr4g3036 833 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Tpr4g3036 833 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3036 Tpr-Chr4 35528086 35537024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3036 98 807 B3 DNA Binding Superfamily AT5G37020 66.301 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g3036 AUX_IAA 8.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3036 - - gmx:100784804 1471.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3526 3 39111271 39120378 Tpr4g3036 4 35528086 35537024 PCT