Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3024 ATGTTTGCCGCTGCTTCCAGGCACGCCAGACCTACAGCTGGCAGCGGCAATCGTATCCGGTCACTTCTAACTGCTTCCGGCATCACCACCGGTTACTCAATTCCCACCACTAACGGTTACCGTTACGGTTACAATAACGGAATCAGTTACAGTAACTATCACCACAAAACATGCCCAAGCTTACTTTTCTCTATCAAAGGCTTTCTCTCTGAATCATCATCATCATCATCATCATCACCATCTGGCAGAAATTTGAAGGTAGATGGAAAAGCATTGTTTTCAACTTCAGCTAAAACTGATGATGGAAGTCAGAAGAACCAAAAAAGTTCTACTACTGTTGCTAAATCGCTTCCAGGTGGTGGGCAAATGGCGGATATAAAGATCCTAAAATCACTTGCTGGTTACATTTGGATGAAAAATAATCTCGAATTTCAGTTTCGGGTTGTTGCTGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTAAATACTGCCACGGGCAATGCTGCTGCTGTTGCTTCAAATCCTACTGTGATGGCCCTTTTTGCTACCCCCGTGTCAGTGTTGATTATATATGGGATTGCACGTTCTGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTTTGTTTTCCAAGGTAGCATTGCGAACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCATGACCTTGACCTTCAATATCATCTAAGTCGAGAAACTGGTGGATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTAGTACCCACTGTATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTGCTGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAACAAGGCTGATAATGACGCTAGTACTAGGCAAATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAATGAAGGTTATGAAACCGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCTGCTCTTTCTACAGCAATGGTTCTATGTTCTCAAGGAATAATGGATGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTCCTCTTCCAACTGTCTCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAAAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTCTAAGATTTAATGGTGGGAGGATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAGAGAAAGATACTAGATGGAATATCACTACTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGTCGGCTTTCATCAACAGAAGAGGAGGTCTATGAAGCTGCCCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCAGAGAAATACTCCACTGTTGTAGGAGAGCGAGGCCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTAGACAGTACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTTCTCATAGCAAATGCAGGAAGATATGCACAACTTTGGGGACAGCAAAATAACACTATTGATGCAATTGACACCGCCATCAAATTGGGAGCATAA 2193 0.409 MFAAASRHARPTAGSGNRIRSLLTASGITTGYSIPTTNGYRYGYNNGISYSNYHHKTCPSLLFSIKGFLSESSSSSSSSPSGRNLKVDGKALFSTSAKTDDGSQKNQKSSTTVAKSLPGGGQMADIKILKSLAGYIWMKNNLEFQFRVVAALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAAAVASNPTVMALFATPVSVLIIYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGGLSRIIDRGSRAINFILSAMVFNVVPTVLEISMVSGILAYKFGAPFAWITSLSVAAYVVFTLSITQWRTKFRKAMNKADNDASTRQIDSLINYETVKYFNNEGYETDHYDKYLKRYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSQGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIRDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVYEAARKAAIHDTIMSFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLIANAGRYAQLWGQQNNTIDAIDTAIKLGA* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3024 730 Gene3D - 472 726 IPR027417 -
Tpr4g3024 730 Pfam ABC transporter 496 645 IPR003439 GO:0005524
Tpr4g3024 730 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 446 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g3024 730 PANTHER BNAA10G12020D PROTEIN 64 720 - -
Tpr4g3024 730 SUPERFAMILY ABC transporter transmembrane region 144 463 IPR036640 GO:0005524|GO:0016021
Tpr4g3024 730 CDD ABCC_ATM1_transporter 480 715 - -
Tpr4g3024 730 ProSitePatterns ABC transporters family signature. 617 631 IPR017871 GO:0005524
Tpr4g3024 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 715 IPR027417 -
Tpr4g3024 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 480 714 IPR003439 GO:0005524
Tpr4g3024 730 CDD ABC_6TM_ATM1_ABCB7 151 454 - -
Tpr4g3024 730 Gene3D ABC transporter type 1, transmembrane domain 135 470 IPR036640 GO:0005524|GO:0016021
Tpr4g3024 730 Pfam ABC transporter transmembrane region 149 433 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g3024 730 SMART AAA_5 505 691 IPR003593 -
Tpr4g3024 730 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 64 720 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3024 Tpr-Chr4 35116415 35126978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3024 454 716 Calmodulin-binding Proteins AT2G36910 45.522 9.71e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3024 K05662 - gmx:100779975 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3024 4 35116415 35126978 Tpr4g3024 4 35116415 35126978 ECH