Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3023 ATGGAAAATCGTTGTTGTTGTTGTTTTCAACTTCAGCTAAAACTCATGATGATGGAAGTCAAAAGAACTAAAAAAGTTCTATTACTTACTGTTGCTAAATCGTCTCCAGGTGATGGACAAATTGCTGATATAAAGATCCTAAAATCGCTAGCTAGTTACCTTTGGATAAAAGATAATCTCGAATTTCAGTTTCGAGTTGTTGCTGCATTGTTCTTACTTGTTGGAGCTAAGGTTATTGATATGATATTGATATGCCTTAGTAGTAAATGTTGGGCCATTGATTGGTTAAATACTGCCACAGGCAATGCTGGTGCCGTTGTTTCAAATCCTACTGTGGTCGCCCTTTTTGCTACCCGTGTGTTGATCGGATATGGGATTGCACGTTCTGGAGCTTCTGCTTTTAATGAACTGCGGAGTGCTGTGTTTTCCAAGGTAGCACTGCGAACAATTCGTTTAGTTTCAAGAAAGGTCTTTTCGCATTTGCACGACCTTGACCTTCAATATCATCTAAGCCGAGAAACTGGTGCATTAAATCGAATAATTGACCGTGGCAGCCGTGCAATAAATTTCATTCTCTCCTCTACGTTGTTCAATGTAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATATGGAGCACCTTTTGCATGGATTACTTCCCTGTCAGTTACTGCTTATGTTGTTTTCACACTTTCTATCACACAGTGGAGGGCTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGATGCTAGTACTAGGCAAATTGATTCACTTATTAATTATGAGACCGTCAAATATTTCAATAATGAAGCTCATGAAGTCGATCATTGCGATAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAGCCCAACACAGTCTTGCTTTGTTGAACTTTGGTCAAAATCTTATATTAAGTATCGCTCTTTCAACAGCAATGGTTCTGTGTTCTCATGGGATCATGATGACAGTTGGTGATTTGGTGATGGCAAATGGGCTTCTCTTCCAACTATCTCTTCCCCTCAATTTCCTCGGTGGTGATTATCGTGAAACTATACAAGGTCTGATTGACATGAAATCAATGTTCCAATTACTTGAGGAAAAAGCATACATTAAGGACAAAGAAAATGCAAAGCCTCTAAGATTTAATGGTGGGAGGATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTACTTGTTCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACCAGTGGAAGTGGTAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGACGATCAAGATATTCGGGAGGTAACGCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGCCGGCTTTCATCAACAGAAGAGGAGGTCTGTGAAGCTGCCTGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGTTAAAGATAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTAGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCACTATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGATATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCATATGAAGTTCTCTTAGCAAATGCAGGAAGATATGCACAGCTTTGGGGACAGCAAAATAACACTATTGATGCAATTGACACAGCCATCAAATTGGGAGCATAA 1938 0.3978 MENRCCCCFQLQLKLMMMEVKRTKKVLLLTVAKSSPGDGQIADIKILKSLASYLWIKDNLEFQFRVVAALFLLVGAKVIDMILICLSSKCWAIDWLNTATGNAGAVVSNPTVVALFATRVLIGYGIARSGASAFNELRSAVFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGALNRIIDRGSRAINFILSSTLFNVVPTILEISMVSGILAYKYGAPFAWITSLSVTAYVVFTLSITQWRAKFRKAMNKADNDASTRQIDSLINYETVKYFNNEAHEVDHCDKYLKRYEDAALKAQHSLALLNFGQNLILSIALSTAMVLCSHGIMMTVGDLVMANGLLFQLSLPLNFLGGDYRETIQGLIDMKSMFQLLEEKAYIKDKENAKPLRFNGGRIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSSTEEEVCEAAWKAAIHDTIMSFPEKYSTVVGERGLKISGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSTNRTSIFIAHRLTTAMQCDDIIVLENGKVVEHGPYEVLLANAGRYAQLWGQQNNTIDAIDTAIKLGA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3023 645 Pfam ABC transporter 411 560 IPR003439 GO:0005524
Tpr4g3023 645 CDD ABCC_ATM1_transporter 395 630 - -
Tpr4g3023 645 CDD ABC_6TM_ATM1_ABCB7 69 369 - -
Tpr4g3023 645 SMART AAA_5 420 606 IPR003593 -
Tpr4g3023 645 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g3023 645 SUPERFAMILY ABC transporter transmembrane region 62 374 IPR036640 GO:0005524|GO:0016021
Tpr4g3023 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 630 IPR027417 -
Tpr4g3023 645 Pfam ABC transporter transmembrane region 118 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g3023 645 Gene3D ABC transporter type 1, transmembrane domain 53 385 IPR036640 GO:0005524|GO:0016021
Tpr4g3023 645 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 37 636 IPR039421 -
Tpr4g3023 645 Gene3D - 386 640 IPR027417 -
Tpr4g3023 645 ProSitePatterns ABC transporters family signature. 532 546 IPR017871 GO:0005524
Tpr4g3023 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 395 629 IPR003439 GO:0005524
Tpr4g3023 645 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 37 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3023 Tpr-Chr4 35105139 35114659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3023 263 626 Calmodulin-binding Proteins AT2G36910 37.500 1.29e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3023 K05662 - gmx:100787870 983.786