Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3021 ATGAACAACATCAATAATAATGGCAACTCAAAGGAGTGGACATGGGATGATGATAAAGGCTTCGAGCAAAACCTCTTAGAATATCTAGACCTCGAGGGCCAATGGGACAAGCCAGCTGTTCTTGTTCCATCGTCAACGACTGAAGTAAAGGAGCATACTCAGGTGATTACGGAAGATCACTTGGATGAAAATAAAGCTACTCCGGTTAAGAAGAAGATCAAGAAAGTGCTTCATTGGAAAGAAGAAGAACACAGGTTGTTTCTAGAGGGGCTTGAGAAGTACGGCAAGGGAAATTGGAAAGCGATTTCAAAACATGTTGGTACAAGATCGTATACTCAAGTTGCTAGCCATGCTCAAAAGCATTTCATTCGAATAGGAGTTAATCAACAAAGTGATAATTCATCAAAAAAGAGTAAAAGAAAGAACAAGTTTGACACAACCAAATGGAATGGAGATTTCCACCCTCTTCTATATAGGGATTATATTCCACCTCCCCATCCTTCTTCAAATCTTCAAACACAACCAATTGTATATCAGTAA 540 0.3907 MNNINNNGNSKEWTWDDDKGFEQNLLEYLDLEGQWDKPAVLVPSSTTEVKEHTQVITEDHLDENKATPVKKKIKKVLHWKEEEHRLFLEGLEKYGKGNWKAISKHVGTRSYTQVASHAQKHFIRIGVNQQSDNSSKKSKRKNKFDTTKWNGDFHPLLYRDYIPPPHPSSNLQTQPIVYQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3021 179 Pfam Myb-like DNA-binding domain 79 121 IPR001005 -
Tpr4g3021 179 CDD SANT 79 122 IPR001005 -
Tpr4g3021 179 Gene3D - 78 125 - -
Tpr4g3021 179 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 8 59 IPR043363 -
Tpr4g3021 179 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 70 157 IPR043363 -
Tpr4g3021 179 SUPERFAMILY Homeodomain-like 74 125 IPR009057 -
Tpr4g3021 179 SMART sant 75 124 IPR001005 -
Tpr4g3021 179 MobiDBLite consensus disorder prediction 126 145 - -
Tpr4g3021 179 ProSiteProfiles Myb-like domain profile. 79 122 IPR001005 -
Tpr4g3021 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 126 IPR017930 -
Tpr4g3021 179 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 70 157 - -
Tpr4g3021 179 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 8 59 - -
Tpr4g3021 179 ProSiteProfiles SANT domain profile. 79 126 IPR017884 -
Tpr4g3021 179 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 74 124 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3021 Tpr-Chr4 35062168 35063809 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g3021 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3021 - - mtr:MTR_5g075790 151.754