LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g3014	ATGAAGTATTTTTCAAAGGGTTTTCTTTGCTTTCTGTTCTGCTGCTGTTTTCTATTGGCTTCTAGTCAGAGAACTGATCCTACTGAAGTTGACACATTGAGAATCATATGGAACCATTTGGTAGATATTAATGGAAATTTGAGCAACTGGAATCGCGGAGACCCTTGTAGTTCGAAGTGGACAGGGGTTATGTGCTCTACAGTTGATGGCTATCTACATGTTCAACGATTGCATCTAATGAATATGAGCTTGGCTGGAAGATTGGTACCTGAGATTGGAAACTTATCTCATCTGGAAATATTGGACTTTATGTGGAACAACATAAGTGGACCTATTCCAAAAGAAATTGGCAATATCAAAACTTTGAGACTCTTGCTCTTGAATGGAAATCAATTAACAGGTCATTTGCCAGAAGAGCTTGGATATCTCCCAGTCTTGAACAGAATACAAATTGATCAAAACAATATTACAGGACCAATACCTTTATCCTTTGCAAACCTGACAAATGCAAAACACTTTCACATGAACAACAATTCACTTAGTGGACAAATTCCATCACAGCTTTCTGGCTTAAGAAACCTTCTTCACCTTCTTCTTGACAACAACAATTTATCAGGACACCTCCCAGATGAACTTGCTGAGATGCCAAGCCTAAATATACTTCAACTTGATAACAATAACTTTGGTGGAAATAGCATTCCAGATTCTTATAGCAACATGTCAAAGTTGTTGAAATTGAGCCTTAGGAACTGCAACTTGACAGGACCGATTCCTGATTTAAGCAGGATACCGCACCTTGGTTATCTTGATCTCAGTTTCAATCAATTGAGTGAATCTATTCCTAGTAATAAGCTATCTGAAAATATCACAACCATTGATTTATCAAATAATAAGCTTAATGGAACTATTCCTTCTAGCTTTTCTGATCTTCCTCGTCTTCAGAAATTGTCAATTTCAAACAATGAACTGAGCGGCGATGTTCCCTCTTCCATTTGGCAGAACAAGACTTTAAATGGAACAAAAAAGCTTTTCTTGGACATGAAAAATAACCGACTTACGAGCATATCAGGCAGCATATCAAATCTTCCTTCAAATATCACAATCCTGCTTGAGGGGAATCCTATATGCTCAAATAACAACAATACCGTAGTTCAATTCTGTGGAACTGAAACTGAAAATGATATGAATGGTAACTCCATTATTATCTGTCCAACTCAACCATGCCCTCCTCCATATGAATACTCTTTGGAGTGTGTCTGTGTAGTGCCGTTGCTCGTTAATTATCGGTTAAAAAGTCCCGGATTTTCAGATTTCAATGCATATGTAGAAGACTTTGAAAGCTTCTTAACAAGTGGTCTTAACATAGATAGTAATCAGCTATTCATTAATAGTTTTGTGTGGGAAGACGGTCGATTGAGAATGTACTTGAAGCTTTTTCCAGTTTCCGTTGATAATACAACCCGTCATACTTTCAATCAAAGCGAGGTTATTCGGTTAAGAGACATGTTCAGAGAATGGGATATTCATGAGAGTGACTTGTTTGGACCTTATGAACTTCTTGACTTTGTTCTCCTCGATCCTTATAAAGACATAACTGTCTCCTCTTCAAGTTCAGGAATAAGCAAAGGTGCATTGGTTGGAATTGTCTTAGGTGCAATTGCATGTTCAGTTACATTATCTGTAATTGTTGCTATTCTTATATTTAGAATACGTTTGAAAGATTACCGTACACTTTCCACACGGCGTAAAAGTAAAACTTCTAAGAGCTCAATAAAAATTGATGGTGTAAGAACATTCAATTATGAAGAAATGGCTTTGGCTACGAACAATTTTAGCCAATCTGCTCAGGTTGGACAAGGCGGGTATGGGAAGGTTTATAAAGGAAATCTACCTGATGGAACTGTTGTTGCCATTAAACGTGCGCAAGAAGGATCACTACAAGGTGAGAAGGAGTTTCTTACAGAAATACAACTGTTATCGAGGTTACATCATCGCAACCTTGTGTCTCTGATTGGTTATTGTGATGAAGATGGTGAACAGATGCTGGTTTATGAATATATGCCAAATGGAACACTAAGGGATCACCTTTCTGCTCATTCTAAAGAACCTCTTAGTTTTCCCATGAGATTGAAGATTGCTCTAGGATCAGCCAAAGGTCTTGTATACCTACACACAGAGGCTGATCCTCCAATATTCCACAGAGATGTCAAAGCTAGCAACATATTATTAGACTCGAAATTCATAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTAGCTCCAGTTCCAGATATTGAAGGCAATTTGCCTAATCATATATCTACAGTTGTAAAGGGGACCCCGGGTTACCTTGATCCGGAGTACTTTTTAACTCGCAAGTTGACCGATAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAAATTGTGACTGGAAAGCCACCAATCTTCCATGGTGAAAATATTATTAGACAGGTTAAACTGGCATTTGGATCAGGTGGAGTGTTTTCGATTGTTGATAACCGAATGGGATTTTACACTTCTGAGATTGTGGAAAAGTTTTTAACATTGGGTTTAAAGTGTTGCAAAGATGAACCAGATGAAAGGCCTAAAATGACAGAAGTAGCTAGAGAACTTGAGAACATATTAGCTATGATGCCTGAGTACCATGCCAAAAAGGGAAGTGAATACGATACAAGTGATTCTGGAACAACATTTAGTTCACAACCTTCATCATCTACTATAAAGAATCCTTTTATTTCAGAAGATATCTTGGGTAGTGACCTTGTTAGTGGAGATGTACCTACCATTAGACCAAGATAG	2826	0.3772	MKYFSKGFLCFLFCCCFLLASSQRTDPTEVDTLRIIWNHLVDINGNLSNWNRGDPCSSKWTGVMCSTVDGYLHVQRLHLMNMSLAGRLVPEIGNLSHLEILDFMWNNISGPIPKEIGNIKTLRLLLLNGNQLTGHLPEELGYLPVLNRIQIDQNNITGPIPLSFANLTNAKHFHMNNNSLSGQIPSQLSGLRNLLHLLLDNNNLSGHLPDELAEMPSLNILQLDNNNFGGNSIPDSYSNMSKLLKLSLRNCNLTGPIPDLSRIPHLGYLDLSFNQLSESIPSNKLSENITTIDLSNNKLNGTIPSSFSDLPRLQKLSISNNELSGDVPSSIWQNKTLNGTKKLFLDMKNNRLTSISGSISNLPSNITILLEGNPICSNNNNTVVQFCGTETENDMNGNSIIICPTQPCPPPYEYSLECVCVVPLLVNYRLKSPGFSDFNAYVEDFESFLTSGLNIDSNQLFINSFVWEDGRLRMYLKLFPVSVDNTTRHTFNQSEVIRLRDMFREWDIHESDLFGPYELLDFVLLDPYKDITVSSSSSGISKGALVGIVLGAIACSVTLSVIVAILIFRIRLKDYRTLSTRRKSKTSKSSIKIDGVRTFNYEEMALATNNFSQSAQVGQGGYGKVYKGNLPDGTVVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVSLIGYCDEDGEQMLVYEYMPNGTLRDHLSAHSKEPLSFPMRLKIALGSAKGLVYLHTEADPPIFHRDVKASNILLDSKFIAKVADFGLSRLAPVPDIEGNLPNHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEIVTGKPPIFHGENIIRQVKLAFGSGGVFSIVDNRMGFYTSEIVEKFLTLGLKCCKDEPDERPKMTEVARELENILAMMPEYHAKKGSEYDTSDSGTTFSSQPSSSTIKNPFISEDILGSDLVSGDVPTIRPR*	942

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g3014	941	Pfam	Leucine rich repeat	288	334	IPR001611	GO:0005515
	Tpr4g3014	941	Pfam	Protein kinase domain	612	877	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr4g3014	941	MobiDBLite	consensus disorder prediction	895	915	-	-
	Tpr4g3014	941	PANTHER	LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN	9	914	-	-
	Tpr4g3014	941	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	731	743	IPR008271	GO:0004672\|GO:0006468
	Tpr4g3014	941	ProSitePatterns	Protein kinases ATP-binding region signature.	617	639	IPR017441	GO:0005524
	Tpr4g3014	941	SUPERFAMILY	L domain-like	36	411	-	-
	Tpr4g3014	941	MobiDBLite	consensus disorder prediction	899	915	-	-
	Tpr4g3014	941	Gene3D	Ribonuclease Inhibitor	179	286	IPR032675	-
	Tpr4g3014	941	Gene3D	Ribonuclease Inhibitor	27	178	IPR032675	-
	Tpr4g3014	941	ProSiteProfiles	Protein kinase domain profile.	611	884	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr4g3014	941	Gene3D	Ribonuclease Inhibitor	287	399	IPR032675	-
	Tpr4g3014	941	Gene3D	Phosphorylase Kinase; domain 1	581	686	-	-
	Tpr4g3014	941	CDD	STKc_IRAK	617	883	-	-
	Tpr4g3014	941	SMART	serkin_6	611	887	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr4g3014	941	SUPERFAMILY	Protein kinase-like (PK-like)	596	898	IPR011009	-
	Tpr4g3014	941	Gene3D	Transferase(Phosphotransferase) domain 1	687	903	-	-
	Tpr4g3014	941	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	9	914	-	-
	Tpr4g3014	941	Pfam	Leucine rich repeat N-terminal domain	28	66	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g3014	Tpr-Chr4	35003123	35018003	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g3014	14	893	Receptor kinase-like Gene Family	AT5G01950	57.254	0.0	972

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Tpr4g3014		Pkinase	3.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g3014	-		-	gmx:100801035	1349.34