Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3012 ATGACCGAAGTTACATTGAATTCAATTGTCAATAACTTATTCTTATACCTTACAGTTAAAAAAGTCACCATGAAGTTCTACAGACCTCCGTTGCAATCTTTCTTTTTTATCATTGTTATTCTTTTTCCTCTAGTTACTTCTGACCTGAATTCCGATAAGCAAGCCCTTCTTGATTTTGTTTCTTCCGTCCCTCATCGTCGCAACCTTAAATGGGACCTAGCTACCTCAATATGTACATCTTGGATAGGCATAACTTGTAATCCAAACCAAACTCGTGTTGTTTCTGTCCGGCTCCCTGGAGTCGGATTAGTAGGCACCATTCCAGCCAATACACTTGGCAAAATTGACTCACTCAAAACTATAAGCCTTCGCTCGAACCTACTTAGTGGAAGTCTACCTCCTGATATTACTTCTCTTCCGTCTCTACAATATCTCTTCCTTCAACATAATAATCTTTCTGGTGAATTGCCAACCTCATTATCGTCGCAACTCAATGCACTTGTTTTGTCATACAATTCATTCAAAGGTAGAATTCCAAAGACATTGCTAAATTTAACACAATTAACTCGATTGAGCCTCGAGAACAACTCATTATCTGGACCGATACCGGATTTCCATGTCAACCTCAAATATTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTTCATCTCTTCATAACTTCTCAAGTTCATCCTTTGAAGGAAACTCCCTTTTATGTGGATTGCCTCTAAAGCCGTGTTCCAGAGTCCCTCCTTCACCGGCTCCTCCTGCATTGGCTCCTGTAAAACACGGCTCAAAAAATAAACTGAGTAAAGGAGCTATCATTGCAATTGCTGTTGGTGGAGCTGTTCTGTTGTTTTTCGTAGCACTTGTCATTGTTCTTTGTTGTTTAAAGAAAAAAGATAATGGAACCTCGAGAGAAGTTAAAGCGAAGGGTCCTATTGGTGGTGGTGGAAGGAATGAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTTCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGCTGCTCTTATAATTTTGATCTCGAGGATTTGTTGAGGGCTTCAGCTGAGGTTCTCGGAAAGGGTAGTTATGGTACTGCTTATAAGGCTATTTTAGAAGAGTTAACGACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTTGGCAAGAGGGAATTTGAACAGCAGATGGAGATTATAGGAAGCATTGGAAGTCACCCGAATGTCGTTCCGCTTCGCGCTTATTATTATTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTACCCAAATGGAAATCTATCTATACTCTTGCATGGTACTAGGACAGGTGGAAGAACAACTTTAGATTGGAACACGCGAGTAAAAATCACTCTCGGAATTGCCCGAGGAATTGCTCATTTACATTCAGTAGGTGGTCCAAAATTTGCACATGGAAATGTGAAATCCTCCAATGTCCTCCTAAACCAAGATAACGATGGCTGCATTTCCGATTTCGGCCTGACTCCGCTCATGAACGTCCCGGCAACCCCTTCTAGAGCCGCAGGCTACCGTGCTCCTGAAGTAATTGAAACTCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGCGTCCTCCTTTTGGAAATGCTTACAGGTAAAGCGCCACAACAGTCTCCGGTACGCGATGACATGGTTGATCTCCCTAGATGGGTTCAGTCCGTTGTTCGGGAGGAGTGGACCGCTGAGGTTTTCGACGTGGAGCTAATGAGGTACCAAAATATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGCATGGCTTGTGTCGCAAAGGTTCCAGATATGAGGCCTAACATGGAGGAAGTAGTGAGAATGATTGAAGAAATTCGGCAATCTGACTCGGATAACCGACCATCTTCTGACGATAATAAATCCAAGGATTTAACTGTTCAAACTCCCTGA 1965 0.4178 MTEVTLNSIVNNLFLYLTVKKVTMKFYRPPLQSFFFIIVILFPLVTSDLNSDKQALLDFVSSVPHRRNLKWDLATSICTSWIGITCNPNQTRVVSVRLPGVGLVGTIPANTLGKIDSLKTISLRSNLLSGSLPPDITSLPSLQYLFLQHNNLSGELPTSLSSQLNALVLSYNSFKGRIPKTLLNLTQLTRLSLENNSLSGPIPDFHVNLKYLNLSYNHLNGSIPSSLHNFSSSSFEGNSLLCGLPLKPCSRVPPSPAPPALAPVKHGSKNKLSKGAIIAIAVGGAVLLFFVALVIVLCCLKKKDNGTSREVKAKGPIGGGGRNEKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEELTTVVVKRLKEVVVGKREFEQQMEIIGSIGSHPNVVPLRAYYYSKDEKLLVCDYYPNGNLSILLHGTRTGGRTTLDWNTRVKITLGIARGIAHLHSVGGPKFAHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDMRPNMEEVVRMIEEIRQSDSDNRPSSDDNKSKDLTVQTP* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3012 654 SUPERFAMILY L domain-like 54 249 - -
Tpr4g3012 654 Gene3D Ribonuclease Inhibitor 49 207 IPR032675 -
Tpr4g3012 654 Pfam Leucine rich repeat N-terminal domain 50 87 IPR013210 -
Tpr4g3012 654 PANTHER LRR RECEPTOR-LIKE KINASE 16 654 - -
Tpr4g3012 654 PANTHER OS05G0588300 PROTEIN 16 654 - -
Tpr4g3012 654 MobiDBLite consensus disorder prediction 629 645 - -
Tpr4g3012 654 MobiDBLite consensus disorder prediction 629 654 - -
Tpr4g3012 654 ProSitePatterns Protein kinases ATP-binding region signature. 365 396 IPR017441 GO:0005524
Tpr4g3012 654 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515
Tpr4g3012 654 MobiDBLite consensus disorder prediction 311 333 - -
Tpr4g3012 654 ProSiteProfiles Protein kinase domain profile. 359 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3012 654 ProSiteProfiles Leucine-rich repeat profile. 208 230 IPR001611 GO:0005515
Tpr4g3012 654 Gene3D Ribonuclease Inhibitor 209 250 IPR032675 -
Tpr4g3012 654 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Tpr4g3012 654 SUPERFAMILY Protein kinase-like (PK-like) 363 637 IPR011009 -
Tpr4g3012 654 Pfam Protein kinase domain 362 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3012 654 CDD STKc_IRAK 365 630 - -
Tpr4g3012 654 Gene3D Transferase(Phosphotransferase) domain 1 435 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3012 Tpr-Chr4 34964922 34969013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3012 31 652 Receptor kinase-like Gene Family AT5G58300 68.720 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tpr4g3012 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3012 - - gmx:100818344 973.77