Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3006 ATGTCTCTACAGAAGCTCAAGCAACTGAAGCTTGAAACACCAAGTTCAGTTTTTGAAGATGACCCATCAATCAAAAGAAAGAGAAAACCCAAAAAAAAGCTTCTTCGTATCATAATCACCGACCATGATGCCACTGATTCTTCCGATGAAGAGAGAGAGAAAAACAACCAAAACAGAACAGAGAGAAAAGGGAAGAGAGAAATCTTTGAAATTAACATGCCCCTTCCCGTACTAGATTCTTCTTTCTCATTTTCTTCTCGTTCATCTTCTTGTTCATCGGAGAAAACCCACAAAAAGCGAAACAGAGTCAAGAAAACACCACCAACCCCCGCCGTCACGCTCCACCACAACAAGTACCGCGGTGTAAGACAGCGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGATCCGCCGGAAACGTGTCTGGCTTGGAACATTTGTAACGGCGGAGGAAGCCGCCGCTGAATATGACAGAGTAGCGTTGTTGTTAAGAGGTCCTGACGCCATTACCAACTTTCCGGTAACTCCAACGGAAGCACAAACTGAAGTACCGCTGCCAGAAAACTCCGGTGGGATTAACGGCGGTGCTGGTTACTCCGACGTTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGACTCGACGCCGTTTGACGGTTTCCGTTACTGTAACGTGGATGCTTTTGGGTTTAACATCGACGCACCGATAAGTTTGCCGGACGTTAACGTTACGCTGACGTGTCATCAGAAATTGGAGAAAGAAGAAGCGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCGTTCTGA 819 0.4689 MSLQKLKQLKLETPSSVFEDDPSIKRKRKPKKKLLRIIITDHDATDSSDEEREKNNQNRTERKGKREIFEINMPLPVLDSSFSFSSRSSSCSSEKTHKKRNRVKKTPPTPAVTLHHNKYRGVRQRPWGKWAAEIRDPIRRKRVWLGTFVTAEEAAAEYDRVALLLRGPDAITNFPVTPTEAQTEVPLPENSGGINGGAGYSDVLASPTSVLTYCDSTPFDGFRYCNVDAFGFNIDAPISLPDVNVTLTCHQKLEKEEAFEEFDLDEFMTWPF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3006 272 PIRSF PTI6 1 272 IPR017392 GO:0003700
Tpr4g3006 272 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Tpr4g3006 272 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Tpr4g3006 272 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Tpr4g3006 272 MobiDBLite consensus disorder prediction 86 106 - -
Tpr4g3006 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 27 215 - -
Tpr4g3006 272 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Tpr4g3006 272 MobiDBLite consensus disorder prediction 12 66 - -
Tpr4g3006 272 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Tpr4g3006 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 215 - -
Tpr4g3006 272 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Tpr4g3006 272 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Tpr4g3006 272 MobiDBLite consensus disorder prediction 36 66 - -
Tpr4g3006 272 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3006 Tpr-Chr4 34914863 34916663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3006 1 222 AP2-EREBP Transcription Factor Family AT4G27950 42.241 3.34e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr4g3006 AP2 5.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3006 K13434 - gmx:100800489 301.212