Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2983 ATGGAGTGGTTTACATGGGATAATGATAAAAGCTTCGAGGAAAACCTTTTAGAATCTCCAGAAGAGATACTTGAGGGACAATCTCTTGTTCCCAGACAATTAGCGGCCGAAGTAAAGGAGCACACTCAAATGATCGAGGAAGGTAATTTCGAGTTGCCATTGCCAACACACAAATATGATTGTATTCCAAAATACAATACTTCGACGGATGTGAACAAAGTTCCTCCACTTATGAAAAAAATCAAGAAAGTGCAACATTGGAAAGAAGAAGAACACAGGTTATTTCTCGAGGGGCTCGAGAAGTATGGCAAGGGAAATTGGAAAGCTATTTCAAAGTATGTTGGCACAAAATCTTATACTCAAGTTGCTAGCCATGCTCAAAAGTATTTCATTCGAGTTGATCAACAAAATGTTGATTCATCAAAAAAGAGTAAAAGAAGAAGTAAATTTGACACTACCTTATGGAACGGAAATTTCCACCCTCTTCTCGATAGGGACTACATTCCTCCTCCTCCTCCAAATGTTGAGACACAACCAATTGTAGAGCAGTTACTGCAACAATTTCAACAAGCTCAAAAAGCATTGTAG 588 0.3844 MEWFTWDNDKSFEENLLESPEEILEGQSLVPRQLAAEVKEHTQMIEEGNFELPLPTHKYDCIPKYNTSTDVNKVPPLMKKIKKVQHWKEEEHRLFLEGLEKYGKGNWKAISKYVGTKSYTQVASHAQKYFIRVDQQNVDSSKKSKRRSKFDTTLWNGNFHPLLDRDYIPPPPPNVETQPIVEQLLQQFQQAQKAL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2983 195 Pfam Myb-like DNA-binding domain 86 130 IPR001005 -
Tpr4g2983 195 CDD SANT 87 130 IPR001005 -
Tpr4g2983 195 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 4 190 - -
Tpr4g2983 195 ProSiteProfiles SANT domain profile. 87 134 IPR017884 -
Tpr4g2983 195 Gene3D - 85 136 - -
Tpr4g2983 195 SMART sant 83 132 IPR001005 -
Tpr4g2983 195 ProSiteProfiles Myb-like domain profile. 87 130 IPR001005 -
Tpr4g2983 195 SUPERFAMILY Homeodomain-like 82 134 IPR009057 -
Tpr4g2983 195 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 190 IPR043363 -
Tpr4g2983 195 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 132 IPR006447 GO:0003677
Tpr4g2983 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 134 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2983 Tpr-Chr4 34305532 34306322 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g2983 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2983 - - mtr:MTR_1g083180 152.525