Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2975 ATGGATTTGACATCAACTTCATCTGGAATTGCCCAAATGCCTGTTGTTGATAGTTCAGACACACTTGCTGATAGTTTGCAATGCTACTCTCCTACTAAAAAAGAAACTTGGGAGTATCTTGCTTTTAAATCGGTTGAAGAGGTTGAAAAATTTTATGGTGATTATGCACTTAAAAGTGGGTTTTCAATTCGGATTTTGTTGAAATCAAGAAACAATTCACAGAATCAGCGAACTGATAAAATACACTATCTACGATATGGATGTAACAAACAAGGTTACAAGAAAGGAAGTTTGCTTGATCCGAAGAACAAGCCAAAATCAGAGAGTCCGGTTGTGGTTGAATTTGAGAAAGTAAAAGAAAAACCTGAGGAAAGGGTTGGTTGTACAGCTGCCATATCTTTGAAGTTGGATGAAACTCTGAATGTCTTTAAGATATACAAATGGGATGTGCCCCATTGTCATCCGTTACATAAACCGGAACATGGATGTTACTTGAGATCATTCAGACAAGTCAATGAAGTGCAAGGACAGCTTGCTGTAATAAATTCGAAAGCCGGGATGTCGATGAGAACTTCTTATGAAGTCATGGGTCAGGGAGTTGGAGGAACAGATAACTTGCCTTTTCGATTTTCAGATTTAAAGAATTATCTGATGACAAATCGGCAAAAAGAGATGCTAGTTGGTGAGGCAACCGTGATTCAAGATTTTTTTAGAAATGAAGCTTTGTCGAAACCATCCTTTTATTATGATATTCAAGTTGATGCTGCGGAAGATATAGCTAGTATTTTTTGGGCAGATGGGATTATGCAGCTTGATTATGCCTTATTTGGTGATGTTATAAGCTTTGATACAACTTACCGAACCAATAATCAGTATCGCCCTTTAGCTGCATTCATGGGCTTTGACAATCATCGTACAAGTGTGTTATTTGGCGCTGCCCTGTTGTATGACGAGACTGCAGCAACTTTTGACTGGTTGTTTACAACATTTTTGAAATGTATGTCCAATAAAAAACCACAATCGATATACACGGATCAGGCGACTGCATTGTTGAAGTCAGTTCCAAATATTTTTGAAGGTGTTTTTCATGGACTTTGCTCATGGCATATGGCAGAGAATGCAAAGAAGAATCTCGGGTCTCGTGCAAATAGTGCTTTTTTTGATGAGTTGAATATTTTGATTTCACATGTTGAGACTGAATCAGATTTTGATTACAATTGGGATCAGATGATGAAAACCTGTTTTGATGGAAGGCCAACTGCAGACTTTAAGTGGCTTGTTCAAACTTACAGGAATCGTATGCATTGGTCTTCAGCTTGGGTCAAAAATCATTTTACTGCTGGTTTGAAAACAACTCAATTAAGTGAGTCCTTCAATGCCTTTCTCCGTCATTTTCTGCAGCCTGATCATTCACTTGTTATATTCTTCAATCATTTTAATATTATGGTCCAGAGAATGAGGGATAATCATACTGAGTTAGACTTTAAGGCTGCAAACACTAGAGCAAAAAACAATTATCCCAACAGTCAACTGATGCGGTCAGTTGTAAACAAATACACCCCAACTTGCTTTGCATTCATTCATAGGCAGTATGATTTTTCTTTCAAATACTTTTATGAAGAGGTCACACCCCAAGTTTCTGCAATTGATAAGGTTTTCAAAGTTTTTACAATTGTACATGTTGATGAACCTGAGGAAGTAGATGGTGTTAATTATGATGATGCTTGTAATGATGGGCCTTCAAACCGTGATGTTTTGGATGAAGAAGTTGCTGAAAACCTTTCCCCAAACTTTGAAAAGCATGATCGACTTGATGAACGGCTTGTGACAATTGATATTAGGGCCAAACGTATTAGCTGCACATGCCGTATGTTTGAGAACAGGGGTTTCTTGTGTCGACATATTTTCAAAATATTGGAGTTTTTAGGTGGTTCTGTGCAATATCATGGTTTGAAGACAATACCTGCAGAATATGTGTTAAAGCGTTGGTGTAGAGATGTGCGTCAGTCTGTTAAATCTACTATCAATGTTGCCACTGAAGGCGCGACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTAACCTTTGTACACGTGTTTGTGCAGATCCTGAGGCTTCTCAAATTTTTCTTAATGGTGTTATTGAAGCTGGGAGAAAGGCAGAAGAGTTGCTTAATTCGAAAGGTATTCATACAGTTCAATCTTCCGTGACGCCACCTAAGTCATCTTCCGTTACGCCATCTAAGTCTTGCAATACAACAGCTGTCAGTGAAGCATCTGATGCTCAAAAGTCGACTGGTCCAAAGTTCAAAAAAAGACCAAATCCAATTAGATCAAAGAAACGACTTAAAAGTGATTATGAATTGGCTAGAGAACACCAGAAATTGCTTATACACCGGAAGAGAAAACAGAGAGGGGCTGAGGATTTAAAGGGGAAAGAGTCTGCTGATTGA 2460 0.3821 MDLTSTSSGIAQMPVVDSSDTLADSLQCYSPTKKETWEYLAFKSVEEVEKFYGDYALKSGFSIRILLKSRNNSQNQRTDKIHYLRYGCNKQGYKKGSLLDPKNKPKSESPVVVEFEKVKEKPEERVGCTAAISLKLDETLNVFKIYKWDVPHCHPLHKPEHGCYLRSFRQVNEVQGQLAVINSKAGMSMRTSYEVMGQGVGGTDNLPFRFSDLKNYLMTNRQKEMLVGEATVIQDFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYALFGDVISFDTTYRTNNQYRPLAAFMGFDNHRTSVLFGAALLYDETAATFDWLFTTFLKCMSNKKPQSIYTDQATALLKSVPNIFEGVFHGLCSWHMAENAKKNLGSRANSAFFDELNILISHVETESDFDYNWDQMMKTCFDGRPTADFKWLVQTYRNRMHWSSAWVKNHFTAGLKTTQLSESFNAFLRHFLQPDHSLVIFFNHFNIMVQRMRDNHTELDFKAANTRAKNNYPNSQLMRSVVNKYTPTCFAFIHRQYDFSFKYFYEEVTPQVSAIDKVFKVFTIVHVDEPEEVDGVNYDDACNDGPSNRDVLDEEVAENLSPNFEKHDRLDERLVTIDIRAKRISCTCRMFENRGFLCRHIFKILEFLGGSVQYHGLKTIPAEYVLKRWCRDVRQSVKSTINVATEGATQAQRYQQICAVTVNLCTRVCADPEASQIFLNGVIEAGRKAEELLNSKGIHTVQSSVTPPKSSSVTPSKSCNTTAVSEASDAQKSTGPKFKKRPNPIRSKKRLKSDYELAREHQKLLIHRKRKQRGAEDLKGKESAD* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2975 819 Pfam SWIM zinc finger 609 635 IPR007527 GO:0008270
Tpr4g2975 819 MobiDBLite consensus disorder prediction 737 819 - -
Tpr4g2975 819 MobiDBLite consensus disorder prediction 737 766 - -
Tpr4g2975 819 MobiDBLite consensus disorder prediction 782 797 - -
Tpr4g2975 819 MobiDBLite consensus disorder prediction 804 819 - -
Tpr4g2975 819 PANTHER OS01G0607050 PROTEIN 41 708 - -
Tpr4g2975 819 SMART 26again6 618 645 IPR006564 GO:0008270
Tpr4g2975 819 Pfam FAR1 DNA-binding domain 50 157 IPR004330 -
Tpr4g2975 819 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 708 IPR031052 GO:0006355
Tpr4g2975 819 Pfam MULE transposase domain 279 373 IPR018289 -
Tpr4g2975 819 ProSiteProfiles Zinc finger SWIM-type profile. 609 643 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2975 Tpr-Chr4 34185864 34188817 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g2975 FAR1 1.7e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2975 - - mtr:MTR_0558s0020 468.774