Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2969 ATGTCTCTACAGAAACTCAAGCAACTGAAGCTTGAAACACCAAGTTCAGTTTTTGAAGATGACCCATCAATCAAAAGAAATAGAAAACCCAAAAAAAAGCTTCTTCGTATCATAATCACCGACCATGATGCAACTGATTCTGATTCCTCCGATGAAGAGAGAGAGAAAAACAACCAAAACAGAACAGAGAGAAAAGGGAAGAGAGAAATCTTTGAAATTAACATGCCCCTTCCCGTACTAGATTCTTCTTTCTCATTTTCTTCTCGTTCATCTTCTTGTTCATCGGAGATAACCCACAAAAAGCGAAACAGAGTCAAGAAAACACCACCAACCCCCGCCGTCACGCTCCACCACAACAAGTACCGCGGTGTAAGACAGCGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGATCCGCCGGAAACGTGTCTGGCTTGGAACATTTGTAACGGCGGAGGAAGCCGCCGCTGAATATGACAGAGTAGCGTTGTTGTTAAGAGGTCCTGACGCCATTACCAACTTTCCGGTAACTCCAACGGAAGCACAAACTGAAGTACCGCTGCCAGAAAATAACTCCGGTGGGATTAACGGCGGTGCTGGTTACTCCGACGTTTTGGCTTCTCCGACGTCTGTTTTAACTTACTGTGACTCGACGCCGTTTGACGGTTTCCGTTACTGTAACGTGGATGCTTTTGGGTTTAACATCGACGCACCGTTAAGTTTGCCGGACGTTAACGTTACGCTGACGTGTCATCAGAAATTGGAGAAAGAAGAAGCGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCGTTCTGA 828 0.4638 MSLQKLKQLKLETPSSVFEDDPSIKRNRKPKKKLLRIIITDHDATDSDSSDEEREKNNQNRTERKGKREIFEINMPLPVLDSSFSFSSRSSSCSSEITHKKRNRVKKTPPTPAVTLHHNKYRGVRQRPWGKWAAEIRDPIRRKRVWLGTFVTAEEAAAEYDRVALLLRGPDAITNFPVTPTEAQTEVPLPENNSGGINGGAGYSDVLASPTSVLTYCDSTPFDGFRYCNVDAFGFNIDAPLSLPDVNVTLTCHQKLEKEEAFEEFDLDEFMTWPF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2969 275 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Tpr4g2969 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 27 218 - -
Tpr4g2969 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 218 - -
Tpr4g2969 275 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Tpr4g2969 275 MobiDBLite consensus disorder prediction 34 68 - -
Tpr4g2969 275 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Tpr4g2969 275 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Tpr4g2969 275 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Tpr4g2969 275 MobiDBLite consensus disorder prediction 12 68 - -
Tpr4g2969 275 PIRSF PTI6 1 275 IPR017392 GO:0003700
Tpr4g2969 275 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Tpr4g2969 275 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Tpr4g2969 275 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2969 Tpr-Chr4 34133746 34135499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2969 33 225 AP2-EREBP Transcription Factor Family AT4G27950 46.500 1.92e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g2969 AP2 5.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2969 K13434 - gmx:100800489 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2969 4 34133746 34135499 Tpr4g2969 4 34133746 34135499 ECH
Tpr3g3584 3 39731074 39732535 Tpr4g2969 4 34133746 34135499 PCT