Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2965 ATGACCCATATAGTTAGGGAGGTGGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACATGTGAAGCTGTCACCATCATTGAAATTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGCTATGTTAAGACACCACGAGGTCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCGCCGGTTTTACAAGAACTGGTGCAAATCAAAGAAGAAAGCTTTTACCAAATATACCAAGAAATATGAAACTGATGAAGGAAAGAAAGATGTTCAAACTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAGTAAGCCAGAAGGTGGACTGTGCATATGATTTATTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACCAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGTGTCACTCGCCTTCCACGAAAGACACACAGAGGTCTCAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGGCAGAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATGTACAAGGTTGGCAAGACTGACCAAGAGTCACATACAGCCATCACTGAATTTGACAGGACTGTGAAGCATATTACGCCTATGGGTGGATTCCCTCATTATGGTATTGTGAAGCATGATTATCTTATGATCAAGGGATGCTGTGTTGGACCAAAGAAGCGGGTTGTCACTCTTCGTCAGTCACTACTCAAGCAGACTTCTCGATTGGCTCTTGAAGAGATCAATCTGAAGTTCATTGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACTACGCAGGAGAAACAAAAGTTTTATGGCCGGTTGAAGGCGTAA 1014 0.431 MTHIVREVEKPGSKLHKKETCEAVTIIEIPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWCKSKKKAFTKYTKKYETDEGKKDVQTQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVSQKVDCAYDLFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKMYKVGKTDQESHTAITEFDRTVKHITPMGGFPHYGIVKHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEINLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2965 337 Gene3D Translation factors 1 333 - -
Tpr4g2965 337 ProSitePatterns Ribosomal protein L3 signature. 160 183 IPR019926 -
Tpr4g2965 337 Gene3D - 31 155 - -
Tpr4g2965 337 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 337 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tpr4g2965 337 SUPERFAMILY Translation proteins 1 318 IPR009000 -
Tpr4g2965 337 Pfam Ribosomal protein L3 1 318 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tpr4g2965 337 Gene3D Ribosomal protein L3, domain 3 174 222 IPR044892 -
Tpr4g2965 337 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2965 Tpr-Chr4 33991077 33993220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2965 1 335 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 83.881 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2965 K02925 - gmx:100792174 615.15