Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2960 ATGGGTAAGAAGGTGAAGCTTGCATTCATAACCAGGGACACAGCCAGAAAAGCAACATACAAGAAAAGGGTAAAAGGTTTGATGAAGAAGCTCAATGAAATCACAACTCTATGTGAAATTAAGGCATGTGCTATAGTGTTCAATCCTGAGGATCTTGAACCACAAATTTGGCCATCCATTCAAGGAGTTCAAAGTGTGCTGACCCAATTCATGCATGTCCCCGAATTCGTTCGGCATCGAAAGATGTTGAACCATGAGAGTTACTTGAAGGAAAAGACTCAAAAGCTGAATGAGAAGCTAAAGAAACAAATGAAGGAGAATAGGGAGATGAAGATGATTCTTCAAATGTATCACTACCTTGAGAAATGGAACATTCCTGAGGATTTAAGTATTGTTGATCATAATGATCTCACATATGTGATTGATGAGAAAATGAAGATGATGGAAATGGACATCAATGATCAAAGGGTATAG 474 0.3819 MGKKVKLAFITRDTARKATYKKRVKGLMKKLNEITTLCEIKACAIVFNPEDLEPQIWPSIQGVQSVLTQFMHVPEFVRHRKMLNHESYLKEKTQKLNEKLKKQMKENREMKMILQMYHYLEKWNIPEDLSIVDHNDLTYVIDEKMKMMEMDINDQRV* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2960 157 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g2960 157 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
Tpr4g2960 157 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 148 - -
Tpr4g2960 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 50 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 Coils Coil 90 110 - -
Tpr4g2960 157 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr4g2960 157 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Tpr4g2960 157 PANTHER MADS BOX PROTEIN 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2960 Tpr-Chr4 33810945 33811418 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2960 3 153 Type I MADS-box Gene Family AT5G48670 47.020 7.20e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g2960 SRF-TF 9.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2960 - - cam:101507243 206.068